Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1654 ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTTCCTTTTACTTTTACGCGCCCTTCATTTCTGCAACAACAACAATACCAAAGCCTCCTCGCCAGTTTTCTTCTTCATGGCCGGCGAACGCTGCCTCGCCGGCCGCCGCACCTCCTCCGCTGCAACTACTGATTCACGACCAACATGTTGTGATGGACAATGGCATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAGTACAAAGGGATTGAAAACTTGCTCGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAACATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCAGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGGCGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGAGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCTCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACAACCTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTTCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCAGGCAGTGAGCTTGTGAGCATAAGAGGGTCACTCCTCTCCTCTCAGTTCCAACCAGTAGAGATTGACACCTTCCTTGGCTTGGCTTTGTTGAAAATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATAACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTCTTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTCCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACGAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTATCTGCAGGTAGTGATATGGACATAGGTGATCTTGTTTATGAGCCACCTAGGAATGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACACTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCACTGCCAATGTTGCCGAATTGCAGGTAAATAATCCAGAAGCCAAGCCTAGTTTATTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGACTTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGGGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA 3963 44.03 MKNSKFFPSILFCLFSSFSFYFYAPFISATTTIPKPPRQFSSSWPANAASPAAAPPPLQLLIHDQHVVMDNGIIGVNLSNPMGMVIGIQYKGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPGDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVLNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALSPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVSIRGSLLSSQFQPVEIDTFLGLALLKMANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALATANVAELQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS 1320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27746002 27762514 - ClG42_11g0165400.10 Clacu11g1654 262531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1654 1320 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Clacu11g1654 1320 Pfam Polysaccharide lyase family 4, domain II 1037 1107 IPR029413 -
Clacu11g1654 1320 CDD RGL4_C 497 668 - -
Clacu11g1654 1320 CDD RGL4_N 696 983 - -
Clacu11g1654 1320 FunFam Rhamnogalacturonate lyase B 383 482 - -
Clacu11g1654 1320 SUPERFAMILY Starch-binding domain-like 383 483 IPR013784 GO:0030246(InterPro)
Clacu11g1654 1320 FunFam Rhamnogalacturonate lyase B 1010 1109 - -
Clacu11g1654 1320 Gene3D - 1010 1109 - -
Clacu11g1654 1320 Gene3D - 383 483 - -
Clacu11g1654 1320 Gene3D - 493 680 - -
Clacu11g1654 1320 Gene3D - 1120 1310 - -
Clacu11g1654 1320 SUPERFAMILY Galactose-binding domain-like 492 656 IPR008979 -
Clacu11g1654 1320 CDD RGL4_M 386 485 IPR029413 -
Clacu11g1654 1320 SUPERFAMILY Starch-binding domain-like 1010 1109 IPR013784 GO:0030246(InterPro)
Clacu11g1654 1320 CDD RGL4_M 1013 1112 IPR029413 -
Clacu11g1654 1320 CDD RGL4_N 63 346 - -
Clacu11g1654 1320 CDD RGL4_C 1124 1310 - -
Clacu11g1654 1320 Pfam Polysaccharide lyase family 4, domain III 495 657 IPR029411 -
Clacu11g1654 1320 Pfam Polysaccharide lyase family 4, domain III 1122 1309 IPR029411 -
Clacu11g1654 1320 SUPERFAMILY Galactose-binding domain-like 1119 1310 IPR008979 -
Clacu11g1654 1320 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 682 1313 IPR051850 -
Clacu11g1654 1320 Pfam Rhamnogalacturonate lyase family 48 255 IPR010325 -
Clacu11g1654 1320 Pfam Rhamnogalacturonate lyase family 682 882 IPR010325 -
Clacu11g1654 1320 Gene3D - 689 953 IPR014718 GO:0030246(InterPro)
Clacu11g1654 1320 Gene3D - 63 338 IPR014718 GO:0030246(InterPro)
Clacu11g1654 1320 SUPERFAMILY Galactose mutarotase-like 695 973 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1654 Clacu-Chr11:27746002 Clacu11g1655 Clacu-Chr11:27769025 1.10E-268 tandem
Clacu01g1892 Clacu-Chr1:31065805 Clacu11g1654 Clacu-Chr11:27746002 6.20E-207 wgd
Clacu11g1654 Clacu-Chr11:27746002 Clacu08g1310 Clacu-Chr8:23054904 1.60E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1654 K18195 - csv:101204193 1260.36