Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1655 | ATGTCATCCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGGTGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGAGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACCCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGACCGGTTACCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATGTATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTATAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA | 1908 | 44.23 | MSSRSGVRLQIRDHHVVVDNGILQLTLSKPGGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLPGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLPGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27769025 | 27775827 | - | ClG42_11g0165500.10 | Clacu11g1655 | 262532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1655 | 635 | CDD | RGL4_C | 443 | 630 | - | - | |
Clacu11g1655 | 635 | CDD | RGL4_N | 15 | 294 | - | - | |
Clacu11g1655 | 635 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 633 | IPR051850 | - | |
Clacu11g1655 | 635 | FunFam | Rhamnogalacturonate lyase B | 329 | 428 | - | - | |
Clacu11g1655 | 635 | SUPERFAMILY | Galactose mutarotase-like | 13 | 297 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Clacu11g1655 | 635 | SUPERFAMILY | Starch-binding domain-like | 332 | 424 | IPR013784 | GO:0030246(InterPro) | |
Clacu11g1655 | 635 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 426 | IPR029413 | - | |
Clacu11g1655 | 635 | SUPERFAMILY | Galactose-binding domain-like | 438 | 630 | IPR008979 | - | |
Clacu11g1655 | 635 | Gene3D | - | 439 | 630 | - | - | |
Clacu11g1655 | 635 | CDD | RGL4_M | 332 | 431 | IPR029413 | - | |
Clacu11g1655 | 635 | Gene3D | - | 8 | 306 | IPR014718 | GO:0030246(InterPro) | |
Clacu11g1655 | 635 | Pfam | Rhamnogalacturonate lyase family | 3 | 201 | IPR010325 | - | |
Clacu11g1655 | 635 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 629 | IPR029411 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1892 | Clacu-Chr1:31065805 | Clacu11g1655 | Clacu-Chr11:27769025 | 1.70E-220 | dispersed | |
Clacu01g2263 | Clacu-Chr1:33712652 | Clacu11g1655 | Clacu-Chr11:27769025 | 1.40E-200 | dispersed | |
Clacu08g1310 | Clacu-Chr8:23054904 | Clacu11g1655 | Clacu-Chr11:27769025 | 6.00E-281 | dispersed | |
Clacu10g0833 | Clacu-Chr10:15118865 | Clacu11g1655 | Clacu-Chr11:27769025 | 4.20E-199 | dispersed | |
Clacu11g1654 | Clacu-Chr11:27746002 | Clacu11g1655 | Clacu-Chr11:27769025 | 1.10E-268 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1655 | K18195 | - | csv:101203947 | 1262.67 |