Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1655 ATGTCATCCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGGTGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGAGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACCCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGACCGGTTACCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATGTATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTATAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA 1908 44.23 MSSRSGVRLQIRDHHVVVDNGILQLTLSKPGGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLPGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLPGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27769025 27775827 - ClG42_11g0165500.10 Clacu11g1655 262532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1655 635 CDD RGL4_C 443 630 - -
Clacu11g1655 635 CDD RGL4_N 15 294 - -
Clacu11g1655 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 633 IPR051850 -
Clacu11g1655 635 FunFam Rhamnogalacturonate lyase B 329 428 - -
Clacu11g1655 635 SUPERFAMILY Galactose mutarotase-like 13 297 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Clacu11g1655 635 SUPERFAMILY Starch-binding domain-like 332 424 IPR013784 GO:0030246(InterPro)
Clacu11g1655 635 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Clacu11g1655 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Clacu11g1655 635 Gene3D - 439 630 - -
Clacu11g1655 635 CDD RGL4_M 332 431 IPR029413 -
Clacu11g1655 635 Gene3D - 8 306 IPR014718 GO:0030246(InterPro)
Clacu11g1655 635 Pfam Rhamnogalacturonate lyase family 3 201 IPR010325 -
Clacu11g1655 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1892 Clacu-Chr1:31065805 Clacu11g1655 Clacu-Chr11:27769025 1.70E-220 dispersed
Clacu01g2263 Clacu-Chr1:33712652 Clacu11g1655 Clacu-Chr11:27769025 1.40E-200 dispersed
Clacu08g1310 Clacu-Chr8:23054904 Clacu11g1655 Clacu-Chr11:27769025 6.00E-281 dispersed
Clacu10g0833 Clacu-Chr10:15118865 Clacu11g1655 Clacu-Chr11:27769025 4.20E-199 dispersed
Clacu11g1654 Clacu-Chr11:27746002 Clacu11g1655 Clacu-Chr11:27769025 1.10E-268 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1655 K18195 - csv:101203947 1262.67