Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1657 ATGTTAATAAATCGAGATCTGATTGGGCCACGTGTCCTCCAAAGAAAGAACCGAGTTGCGGATCTAAGTATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCAAAGCGTCGGAGCGGATTGCTGAAAAAGGCGAAAGAACTAGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATAACAAAACAAAAGAGGAGCACCATCAGCTTGGGATCTCAACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCAACTTTACGGCAGCAACTGCAGAGCTTACATGAAAACCATCGGAAGATGATGGGTGAAGAGCTGACTGGTTTGAGCGTCAAAGACCTACAAAATCTAGAAAATCAATTGGAGATAAGTCTCCGTGGTGTCCGTATGAAAAAGGATCAAATCTTAATGGATGAGATACAAGAACTAAACAGAAAGGGAAGCCTAATTCACCATGACAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAACCAGGAATTACACAAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCAGACATAAGCAGCCTTACAAACGGACTTGGTGTTGGAGAGGATGCAGGCATACCTATCAACCTTCAACTCAGCCAGCCACAGCAACAAGACAATGAGGCACCAGAAAGAGCTACAAAACTGGGGATGAATAGTATTTACCTAGAATCTCTCCTGCTCAACTACAGCAGACTGTTCCAGCAGTCTGTTTACAAAAATTTGCAAAACATTAGAGAACGTGTTGGTCCTCTAAGAGTTGATCCTGGAACCTTTTCCCCAGAAGGAATCTTAGAGAAGCTGAAATTGAAGAGTGGGTTAATCTCTCCAACTTGCTTTCCCAATTACCCCTTCACAGAATGCTGA 987 43.26 MLINRDLIGPRVLQRKNRVADLSMGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEHHQLGISTSEVKYWQREAATLRQQLQSLHENHRKMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQELNRKGSLIHHDNMELYKKVNLIRQENQELHKKVYGTKDANGADISSLTNGLGVGEDAGIPINLQLSQPQQQDNEAPERATKLGMNSIYLESLLLNYSRLFQQSVYKNLQNIRERVGPLRVDPGTFSPEGILEKLKLKSGLISPTCFPNYPFTEC 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27790692 27807211 + ClG42_11g0165700.10 Clacu11g1657 262534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1657 328 ProSiteProfiles MADS-box domain profile. 24 84 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 FunFam MADS-box transcription factor MADS-MC 36 108 - -
Clacu11g1657 328 Coils Coil 109 136 - -
Clacu11g1657 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 PRINTS MADS domain signature 26 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 PRINTS MADS domain signature 61 82 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 PRINTS MADS domain signature 46 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 SUPERFAMILY SRF-like 25 112 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 ProSitePatterns MADS-box domain signature. 26 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g1657 328 Pfam K-box region 106 193 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g1657 328 SMART madsneu2 24 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 Gene3D - 36 133 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1657 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 240 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu11g1657 328 CDD MADS_MEF2_like 25 101 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0058 Clacu-Chr8:1344694 Clacu11g1657 Clacu-Chr11:27790692 3.10E-35 dispersed
Clacu08g1210 Clacu-Chr8:22032334 Clacu11g1657 Clacu-Chr11:27790692 2.50E-32 dispersed
Clacu09g1669 Clacu-Chr9:29613770 Clacu11g1657 Clacu-Chr11:27790692 1.50E-18 dispersed
Clacu10g0966 Clacu-Chr10:20956602 Clacu11g1657 Clacu-Chr11:27790692 3.20E-24 dispersed
Clacu10g0988 Clacu-Chr10:21301629 Clacu11g1657 Clacu-Chr11:27790692 2.10E-32 dispersed
Clacu10g1213 Clacu-Chr10:24916609 Clacu11g1657 Clacu-Chr11:27790692 1.50E-25 dispersed
Clacu11g1657 Clacu-Chr11:27790692 Clacu11g1780 Clacu-Chr11:29023710 9.10E-23 dispersed
Clacu01g1891 Clacu-Chr1:31052607 Clacu11g1657 Clacu-Chr11:27790692 1.40E-57 wgd
Clacu11g1657 Clacu-Chr11:27790692 Clacu08g1325 Clacu-Chr8:23236709 6.50E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48673 PF01486 K-box 5.00E-26 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1657 K09264 - csv:101203545 440.269