Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1657 | ATGTTAATAAATCGAGATCTGATTGGGCCACGTGTCCTCCAAAGAAAGAACCGAGTTGCGGATCTAAGTATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCAAAGCGTCGGAGCGGATTGCTGAAAAAGGCGAAAGAACTAGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATAACAAAACAAAAGAGGAGCACCATCAGCTTGGGATCTCAACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCAACTTTACGGCAGCAACTGCAGAGCTTACATGAAAACCATCGGAAGATGATGGGTGAAGAGCTGACTGGTTTGAGCGTCAAAGACCTACAAAATCTAGAAAATCAATTGGAGATAAGTCTCCGTGGTGTCCGTATGAAAAAGGATCAAATCTTAATGGATGAGATACAAGAACTAAACAGAAAGGGAAGCCTAATTCACCATGACAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAACCAGGAATTACACAAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCAGACATAAGCAGCCTTACAAACGGACTTGGTGTTGGAGAGGATGCAGGCATACCTATCAACCTTCAACTCAGCCAGCCACAGCAACAAGACAATGAGGCACCAGAAAGAGCTACAAAACTGGGGATGAATAGTATTTACCTAGAATCTCTCCTGCTCAACTACAGCAGACTGTTCCAGCAGTCTGTTTACAAAAATTTGCAAAACATTAGAGAACGTGTTGGTCCTCTAAGAGTTGATCCTGGAACCTTTTCCCCAGAAGGAATCTTAGAGAAGCTGAAATTGAAGAGTGGGTTAATCTCTCCAACTTGCTTTCCCAATTACCCCTTCACAGAATGCTGA | 987 | 43.26 | MLINRDLIGPRVLQRKNRVADLSMGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEHHQLGISTSEVKYWQREAATLRQQLQSLHENHRKMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQELNRKGSLIHHDNMELYKKVNLIRQENQELHKKVYGTKDANGADISSLTNGLGVGEDAGIPINLQLSQPQQQDNEAPERATKLGMNSIYLESLLLNYSRLFQQSVYKNLQNIRERVGPLRVDPGTFSPEGILEKLKLKSGLISPTCFPNYPFTEC | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27790692 | 27807211 | + | ClG42_11g0165700.10 | Clacu11g1657 | 262534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1657 | 328 | ProSiteProfiles | MADS-box domain profile. | 24 | 84 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | FunFam | MADS-box transcription factor MADS-MC | 36 | 108 | - | - | |
Clacu11g1657 | 328 | Coils | Coil | 109 | 136 | - | - | |
Clacu11g1657 | 328 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 33 | 80 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | PRINTS | MADS domain signature | 26 | 46 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | PRINTS | MADS domain signature | 61 | 82 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | PRINTS | MADS domain signature | 46 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | SUPERFAMILY | SRF-like | 25 | 112 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | ProSitePatterns | MADS-box domain signature. | 26 | 80 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | ProSiteProfiles | K-box domain profile. | 109 | 199 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Clacu11g1657 | 328 | Pfam | K-box region | 106 | 193 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Clacu11g1657 | 328 | SMART | madsneu2 | 24 | 83 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | Gene3D | - | 36 | 133 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu11g1657 | 328 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 24 | 240 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Clacu11g1657 | 328 | CDD | MADS_MEF2_like | 25 | 101 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g0058 | Clacu-Chr8:1344694 | Clacu11g1657 | Clacu-Chr11:27790692 | 3.10E-35 | dispersed | |
Clacu08g1210 | Clacu-Chr8:22032334 | Clacu11g1657 | Clacu-Chr11:27790692 | 2.50E-32 | dispersed | |
Clacu09g1669 | Clacu-Chr9:29613770 | Clacu11g1657 | Clacu-Chr11:27790692 | 1.50E-18 | dispersed | |
Clacu10g0966 | Clacu-Chr10:20956602 | Clacu11g1657 | Clacu-Chr11:27790692 | 3.20E-24 | dispersed | |
Clacu10g0988 | Clacu-Chr10:21301629 | Clacu11g1657 | Clacu-Chr11:27790692 | 2.10E-32 | dispersed | |
Clacu10g1213 | Clacu-Chr10:24916609 | Clacu11g1657 | Clacu-Chr11:27790692 | 1.50E-25 | dispersed | |
Clacu11g1657 | Clacu-Chr11:27790692 | Clacu11g1780 | Clacu-Chr11:29023710 | 9.10E-23 | dispersed | |
Clacu01g1891 | Clacu-Chr1:31052607 | Clacu11g1657 | Clacu-Chr11:27790692 | 1.40E-57 | wgd | |
Clacu11g1657 | Clacu-Chr11:27790692 | Clacu08g1325 | Clacu-Chr8:23236709 | 6.50E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48673 | PF01486 | K-box | 5.00E-26 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1657 | K09264 | - | csv:101203545 | 440.269 |