Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1668 ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGGCAGCCGTCCAAGAATCTCATGGCTGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTCTGGCAGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAAGTTGGAAAGGGAAATTGAGGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGGAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 996 41.37 MELNENYLLEEVLGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERRGDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27894256 27897023 + ClG42_11g0166800.10 Clacu11g1668 262545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1668 331 Coils Coil 196 223 - -
Clacu11g1668 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Clacu11g1668 331 Pfam Plant bHLH transcription factor, ACT-like domain 250 320 IPR054502 -
Clacu11g1668 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 326 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu11g1668 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983(InterPro)
Clacu11g1668 331 CDD ACT_UUR-ACR-like 257 320 - -
Clacu11g1668 331 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
Clacu11g1668 331 Gene3D - 152 224 IPR036638 GO:0046983(InterPro)
Clacu11g1668 331 Coils Coil 95 115 - -
Clacu11g1668 331 Pfam Helix-loop-helix DNA-binding domain 164 206 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1414 Clacu-Chr5:16452216 Clacu11g1668 Clacu-Chr11:27894256 2.70E-32 dispersed
Clacu11g1359 Clacu-Chr11:23576940 Clacu11g1668 Clacu-Chr11:27894256 1.80E-12 dispersed
Clacu03g0397 Clacu-Chr3:4434537 Clacu11g1668 Clacu-Chr11:27894256 8.60E-34 transposed
Clacu01g1886 Clacu-Chr1:30999372 Clacu11g1668 Clacu-Chr11:27894256 1.50E-68 wgd
Clacu11g1668 Clacu-Chr11:27894256 Clacu08g1345 Clacu-Chr8:23465148 5.80E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48674 PF00010 HLH 5.70E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1668 - - - 0.0