Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1672 ATGTCTTGTGGGATGTGGGCGTCGATTGATTGTTCTGATTCCCAGATGGACCTTACGCATATGGCCGTCGTCTCATCTGCTCGCTTAAATTCTCTCACAACCACACCGCTCCGGCTGTTTCTCCCGTCAGTTTCCTGTTCTTTCCCTTCCCGGAATAAAATTCCCTGCTCCTTTCAAAGCCTAACACCTCCCCAGTTCACCCCCATCGCCATTTTTGTTTCACAACTAGTTTTCCCTTCTAGGTCTACTATGGCAGGAGTTCTCAGAGAAAGAGCACTATCTCTCCTAGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTAAAGCAGGTTAAGGATATCATACTGGCCATCGAGCCATCATTCGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCCTCCCCCGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTAAGAGCCATGGAACATTCTCCTCTATTAATGTCGGTTTTATTGGCATCTTTAAAGGATGAAGAATCAATCGTGGCAGGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGGTACCTTAAGAGAGATGACATTACAGTTGCATCGGCGAGGTAAAGTTGAAAGATGGCTTGAAGAACTGTGGATGAGAATGTTGAAGTTTAAAGATGAGGTTTTGGCAGTTGCTATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACATCCGATACAAATGATCCACAGAAAGCTATCTCAGAAGGAAGTAGGGACGTTTTTAACATTTCATGGCTAGATGGTGGGTTTCCTATTTTGGATCCAGTTGGGCTAATGTCAGAAGCTAATAGGATGCTTGGTATTCTGTTGAATTTGTTGCAGACCAGTTCTGTTCCTGGTACATACACAGTAACAGTTGTCAGTAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTAACATTTTGTCAGCACTGCTGGAATTTGTTCCAAGTTTTGAGACGATAAGAGGGCGTCATGCTGCCAGCATACAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCGGCTTTTGTAGAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGCTATAAATGCTGGAGACGCTGCAGATCAAGTAATCAGGCAAGTGGACAAAATGGTGAAAGCTGCAGATCGAGCTTCACGTGATGCTTGGCTGGGCAAGGATGACCAATCTTCAAATCAGCTTAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGACGATGATCTTCCCAATGGTCGAGAGGCTTCCAAGCAATTCCGCTTTGGTCCAGATGTTCACCCAATTTCCACTTCTCAAAAAGATGGTTCTCTTCAGAATGCCACCTCTAATGGGACATCCCACGATGTTCCTACGTTAGATGTTGAACTGACTCCTGCAGAGCAAATGATTGCGATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTTTGATTTCAAATATTCATCCCGACTTGTTGGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCTTCCCTTCCTTTATCTTGGCATGGGGACTTGCCTGTAACTCGACAAGGAAGTAGTCATGTACAGGTTCTGGTGCCATCAGCCCCACTGAGTTCTGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTTTTTCTTCGGCCACCTCAGCTGGTTCAACTTTTGCTGAGTCTACTGTCAATAGTCTCCCCGTTGATTCTAAACGTGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGTCGTGGAGGAGTATCTTCTGCTTCTAATGTGGAAGAGGCAAGTTCAAATACATCTGATGTTGATGGCTCCATATCTTTGGGAAAATCTGCTTCGGTTCCAGTTCCTGTGACAATCGAGAATTCTTCGGTATCTCTTATATCAAAAACGAATGTTGAAGAAAAAATTATGGAGACTCAATTCGTGTTTGGAACAGATCAATCAACCCCCAAATCCAGATCTCCCGATAGACCTGAGAAAGCCGACTCTATCTTAGACATTAATGCCCCTCTGGATCCTATGCCTACTACTGTCGAAAAAGCTGATGATGGTTTAGTTGCAGTTAACTTGTTTGATGACTTGGCAACTAAGAGGGATGATACATCATCTTCTATAGAATACAATCAGTATTCTCCATCAGTTACAAATGCAGCTGCTTCTGAAGATACCTGTGAGGAGTTGCCTTTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAACAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGCAAGAATTTAAATGGGGCAGACTGTCATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGGTGCTGATGATGATATTGTTCGAATGTTGGAAAAGCAAGTTGCTGTCGACTACCAACAGCAAAAGGGACATGAGCTTGCTTTGCATGTCTTATATCACCTGCATTCACTTGATATTCTGGATTCAGTGGAAAGTTCTTCTTTCGCTGTGTATGAGAAGTTTCTTCTAGTTGTGGCTAAATCGTTGCTAGATGCTTTTCCAGCTTCGGACAAATCTTTTAGTAGACTTCTTGGTGAAGTTCCAGTTTTGCCGGACTCTACCTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGGTTCTCCTGATATTGAACGTGTCACACAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTGAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACATGTTCCTGTCCGCAGTAGATGACATAGATCAGACAGATGTAGAGCCTTCGCCACATGGATCAATTGAACAAAGAACTGCAGGAAAGGGTGAGAGTCAGGAAACATCCGTTGGTGGTTCTCAAGTGTCAGACCCCGGAACCTCAGAAAACGATTCAATGAAGAGTTCACAACCTACATTACATGGCAGTTCAACCTTGTCACTTTCAGAAGCCGAAAGACATATTTCTCTTCTTTTTGCTCTATGCATGAAGAAACCTTGTCTGCTTCGGTTTGTATTTGATGCTTATGGACGGGCTCCTAGAGCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGGTCATCTGATTCTGACTTGCTTAGAATAATATCAGATCCACCTCCAGGAAGTGAACATCTGTTAGCATTGGTACTACAGGTACTAACTCAAGAGACGACGCCTTCTTCTGATCTGATTGCAACTGTTAAACATTTATATGAAACTAAACTGAAGGATGTGACGATTCTCATTCCAATGTTGTCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTAGAGAAGTTTCAGAGAGCATTGGCTTACATATTACAGGGTTCAGCACATACACGCCCAGCCTTAACACCTGTTGAAGTATTGATTGCCATCCACAACATAATTCCTGAAAAAGACGGCCTTCCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTCGAGCAACGAACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTTCTCTGGTTGATTTCGTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTTTTGAAATGTGCATTTCAAACACAGCCTCATTCCTTTCGAGTACTATTACAGTTACCACCGGCACAACTTGAAAATGCTTTGAATAAATATGTTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAGTCTACTCTCTCTAGACCAATGCTCGTAGTTCTGGGTCTTGAAAATGAAAGGCATTTGTAG 4167 42.91 MSCGMWASIDCSDSQMDLTHMAVVSSARLNSLTTTPLRLFLPSVSCSFPSRNKIPCSFQSLTPPQFTPIAIFVSQLVFPSRSTMAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEESIVAGQSIISGQKLFCGTLREMTLQLHRRGKVERWLEELWMRMLKFKDEVLAVAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGSRDVFNISWLDGGFPILDPVGLMSEANRMLGILLNLLQTSSVPGTYTVTVVSSLAAIARKRPVHYGNILSALLEFVPSFETIRGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRAINAGDAADQVIRQVDKMVKAADRASRDAWLGKDDQSSNQLNASVDLTRKRPRLLDDDDLPNGREASKQFRFGPDVHPISTSQKDGSLQNATSNGTSHDVPTLDVELTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASLPLSWHGDLPVTRQGSSHVQVLVPSAPLSSVQTSVATAQVPFSSATSAGSTFAESTVNSLPVDSKRDPRRDPRRLDPRRGGVSSASNVEEASSNTSDVDGSISLGKSASVPVPVTIENSSVSLISKTNVEEKIMETQFVFGTDQSTPKSRSPDRPEKADSILDINAPLDPMPTTVEKADDGLVAVNLFDDLATKRDDTSSSIEYNQYSPSVTNAAASEDTCEELPLLPPYVDLTPEQQTTVRNLAAEKIFDSCKNLNGADCHQIRLAIIARLVAQVGADDDIVRMLEKQVAVDYQQQKGHELALHVLYHLHSLDILDSVESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVLPDSTLELLHNLCYCDITDNQGKGSPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDDIDQTDVEPSPHGSIEQRTAGKGESQETSVGGSQVSDPGTSENDSMKSSQPTLHGSSTLSLSEAERHISLLFALCMKKPCLLRFVFDAYGRAPRAVKEAVHEHIPNLITALGSSDSDLLRIISDPPPGSEHLLALVLQVLTQETTPSSDLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAYILQGSAHTRPALTPVEVLIAIHNIIPEKDGLPLKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPSLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPAQLENALNKYVNLKGPLAAYASQPSTKSTLSRPMLVVLGLENERHL 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27926216 27952605 + ClG42_11g0167200.10 Clacu11g1672 262549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1672 1388 Pfam Symplekin tight junction protein C terminal 1173 1351 IPR022075 -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 612 627 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 420 492 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 602 655 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 440 456 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 634 652 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 1015 1067 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 471 492 - -
Clacu11g1672 1388 Pfam Symplekin/PTA1 N-terminal 182 394 IPR032460 -
Clacu11g1672 1388 Gene3D - 81 421 IPR011989 -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 1028 1067 - -
Clacu11g1672 1388 MobiDBLite consensus disorder prediction 423 437 - -
Clacu11g1672 1388 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 85 1386 - -
Clacu11g1672 1388 SUPERFAMILY ARM repeat 94 1309 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1672 K06100 - - csv:101202828 2299.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0757 Clacu-Chr4:21831013 Clacu11g1672 Clacu-Chr11:27926216 6.10E-211 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40