Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1674 ATGTCGTCTCTACATTTTCTCTGCTTTTTCTCTCTAATTTCCATCGCCTTTCTCCCTGGAATCAAATCTGACGACGAACGTCAAATCCTAACCAAACTCAAATCCTCACTCCAAAATTCAAACGCCAATGTCTTCCACAACTGGGGATTTCAAAATCCCATCTGCAATTTCACCGGAATCGCTTGTAATTCAGATGGGTTTGTTAAGGAAATTGACCTATCCAAACGGGGTTTATCTGGGATTGTTCCGTTTGATTCCGTTTGCCAATTGCAAGCCTTGGAGAAGTTGGCTCTTCGGTCTAATTCCCTGCACGGTGAAATCACAGAGGGTTTGAATAATTGTGTGAAATTGAAATATTTGGATCTCAGCAGCAATTCCTTCTCTGGTTCTTTTCCCAACATACATTCTTTGAGTGAATTGGAGTATTTGTATTTGAATGTAAGTGGGATTTCAGGAAAGTTTCCATGGAAATCAGTTGGGAATTTGAGTGGTTTGATTGAGTTGAGTGTTGGGGATAACGCTTTTGAAAACACTACGTTTCCTGTGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACGCAGCTTCTTAATTTGGAATTTTCGGATAATTATATAACAGGGACTATTCCGCCGGAGATTGCCAACCTGCAGAAGCTATGGCAGTTGGAATTCTACGGTAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCTTTGAATCAAATTCATGGGGATTTATCAGAGTTGAGGTTTTTGACGAACCTGGTTTCTCTGCAAATGTTTGAAAATCAAATTTCCGGCGAAATTCCGGTGGAGTTTGGTGAATTCAAGTCACTGGTGAATCTCTCCCTTTACAAGAACAAGCTTACAGGGCCTCTTCCGCAATCGATTGGTTCTTGGACGGAGTTTGATTTTATTGATGTATCTGAAAATTTCTTGACGGGGCCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGCAGAAGCTTCTCATCCTTCAGAACAATTTTACCGGTGAAATTCCGGCAACCTACGCTAACTGCTCCACTTTAACCCGATTTAGAGTCAGTCAGAACTCGCTCACCGGAGTCGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCCTCGAATCAGTTGGAAGGTTCAATCACTCCCAACATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGATTCTCAGGTCGACTGCCAACGGAGATTTCGCAAGCAAAATCTCTCGCTTCGGTTGACCTGAGCAATAATCAATTCACCGATGAACTTCCGATGACTATCGGCGACCTGAAGAATCTCGATAGCTTCGAATTGCAGGGGAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTTGTGTAATTCCTTGAGCATCATCAATCTGGCGGATAATTTCTTCTCTGGACAAATCCCTTCGTCGCTAGGGTTTCTTCCAGTTCTAAACTCTTTGAATCTCTCCAATAACGGCCTATCGGGTGAAATCCCCTCGACGTTTTCGCATCTGAAATTGAGTTTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAAGCGCTCTCGAATGGAGCTTACAAAGAAAGCTTTGCCGGAAACCCTGGCCTCTGCAGTGAGGCCAATGACTTTATACGGCGATGTTCACAGAGTTCCGGCGCGTCGAAGGACGTCAAAACACTTGTCATCTGTTTCGCCGTCGGATTAATCCTTCTCAGTGTGACGCTGTGGTGCTTCATAACCTTGAAAAAGAGCAGAAAAGATCGAGATCGATCGCTTAAAGAAGAATCGTGGGACCTAAAATCGTTCCACGTAATGACGTTCACAGAGGACGAGATACTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACTGTCGGAAACGGAAAAGAATTCGCCGTGAAGCACATTTGGAACACTAATCCGTACGAAGGAAAGAAGAAGAGTTACCGTAGTTCATCGACGATTCTGGTGAAACAGAGAACGAAGTCATCGGAATTTGAGTCGGAAGTGAAGACTCTAAGCTCGATCCGCCACGTGAACGTGGTGAAGCTGTACTGCAGCATCACGAGCGAGGTTTCAAGCCTGTTGGTGTACGAATACATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTGGGAGCGGCGAAGGGACTGGAGTATCTTCATCACGGTTGTGACCGGCCGGTGATCCACCGGGATGTTAAGTCGAGTAACATACTTTTGGATGAATTTCTGAAGCCGAGAATCGCGGATTTTGGGCTTGCCAAAATTCTTCACACAACTGGGTTCAACGAGACCACCCATGTCATTGCCGGCACCCCGGGCTACATCGCACCAGAGTATGGATACACTTATAAAGTCGATGAGAAGAGCGACGTGTACAGTTTTGGAGTTGTATTGATGGAGTTAGTGAGTGGGAAAAAGGCAATAGAGGCCGAGTTTGGAGAGAACAAGGAGATTGTACAATGGGTATCAAACAATTTGAAGACAAGAGAAAGTGTATTAAGCTTAGTAGATTCAAGAATTCCAGATGTATTTAAAGAAGATGCAATAAAGGTATTAAGAATTGCAATTTTGTGCACAGCAAGACTTCCCACTTTGAGACCCACAATGAGAAGTGTCGTTCAAATGCTCGAAGAAGCTCAACCTTGTCGCTTGCTTGGAATTCTCATTACCAAAGATGGTGGGACTGTTAAAAAGGAATTACCTTTGGATGTCAATAAAATTAGTCTCTAA 2949 43.71 MSSLHFLCFFSLISIAFLPGIKSDDERQILTKLKSSLQNSNANVFHNWGFQNPICNFTGIACNSDGFVKEIDLSKRGLSGIVPFDSVCQLQALEKLALRSNSLHGEITEGLNNCVKLKYLDLSSNSFSGSFPNIHSLSELEYLYLNVSGISGKFPWKSVGNLSGLIELSVGDNAFENTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTQLLNLEFSDNYITGTIPPEIANLQKLWQLEFYGNQLTGTLPVGLRNLTGLKNFDASLNQIHGDLSELRFLTNLVSLQMFENQISGEIPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDFIDVSENFLTGPIPPDMCKKGTMQKLLILQNNFTGEIPATYANCSTLTRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNQLEGSITPNIGKAVALSELYIGNNRFSGRLPTEISQAKSLASVDLSNNQFTDELPMTIGDLKNLDSFELQGNKFSGSIPETIGLCNSLSIINLADNFFSGQIPSSLGFLPVLNSLNLSNNGLSGEIPSTFSHLKLSFLDLSNNQLTGPVPQALSNGAYKESFAGNPGLCSEANDFIRRCSQSSGASKDVKTLVICFAVGLILLSVTLWCFITLKKSRKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEGKKKSYRSSSTILVKQRTKSSEFESEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTGFNETTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKEIVQWVSNNLKTRESVLSLVDSRIPDVFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLLGILITKDGGTVKKELPLDVNKISL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27981494 27985131 + ClG42_11g0167400.10 Clacu11g1674 262551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1674 982 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Clacu11g1674 982 SUPERFAMILY L domain-like 24 349 - -
Clacu11g1674 982 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1674 982 FunFam Receptor-like protein kinase HSL1 284 591 - -
Clacu11g1674 982 Gene3D Ribonuclease Inhibitor 24 135 IPR032675 -
Clacu11g1674 982 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Clacu11g1674 982 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Clacu11g1674 982 SUPERFAMILY RNI-like 317 568 - -
Clacu11g1674 982 FunFam Leucine-rich receptor-like protein kinase family protein 182 278 - -
Clacu11g1674 982 Gene3D Phosphorylase Kinase; domain 1 632 755 - -
Clacu11g1674 982 Gene3D Ribonuclease Inhibitor 353 600 IPR032675 -
Clacu11g1674 982 SUPERFAMILY Protein kinase-like (PK-like) 651 950 IPR011009 -
Clacu11g1674 982 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524(InterPro)
Clacu11g1674 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1674 982 Gene3D Ribonuclease Inhibitor 136 352 IPR032675 -
Clacu11g1674 982 FunFam Receptor-like protein kinase HAIKU2 644 755 - -
Clacu11g1674 982 FunFam Probable inactive receptor kinase RLK902 23 181 - -
Clacu11g1674 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 952 IPR050647 -
Clacu11g1674 982 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1674 982 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 756 959 - -
Clacu11g1674 982 SMART serkin_6 661 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0804 Clacu-Chr10:13660984 Clacu11g1674 Clacu-Chr11:27981494 1.20E-73 dispersed
Clacu10g0808 Clacu-Chr10:13816678 Clacu11g1674 Clacu-Chr11:27981494 1.80E-74 dispersed
Clacu11g1674 Clacu-Chr11:27981494 Clacu07g1132 Clacu-Chr7:25947298 7.80E-54 dispersed
Clacu11g1674 Clacu-Chr11:27981494 Clacu11g1675 Clacu-Chr11:27998616 3.10E-95 tandem
Clacu02g0766 Clacu-Chr2:8360058 Clacu11g1674 Clacu-Chr11:27981494 1.30E-168 transposed
Clacu01g1868 Clacu-Chr1:30804642 Clacu11g1674 Clacu-Chr11:27981494 4.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73983 PF00069 Pkinase 2.80E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1674 - - - 0.0