Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1675 ATGCCTCTTCCTTTCTACTTCTTCTTTCTTCTATCTTTCCTTTCTCTTGCCATTGGAACTGACCAGTTTCAATTTTTCTCTTTCATGCAAAAGGGTGTCATCGGGAATTCTCTCCCCTCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGAGTTAGCTGTAACCAAAAGGGGTTAGTGGTCGGAATTGATCTCTCTGGCAGGGCGGTTTCCGGGAGGTTTCCGGCAGATGTTTGTTCTTATTTGCCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGCTTTCGTGGAACCTTTCCACGTGGGATAACCAATTGCTCTGTTTTGGAAGAATTGGATATGAGTTTTCTGTCACTGACGGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATTCTCGACATGTCGTACAATAATTTCACCGGTGAATTCCCCTTGTCGGTTTTCAGTTTAACCAATCTCGAGAAGTTGAATTTCAACGAGGACAACAATTTCAATACGTGGCAGTTGCCGGAGAGTGTGTCCGGCTTGACGAAGTTGAAATCCATGGTGTTAACGACTTGTATGCTGGAGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACCTTGAATTAAGCGGCAATTTCCTCACCGGAAAAATCCCAAGAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAGTCGGAGAAATTCCAGAGGAACTTGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCAGTCAACAAGTTGACTGGGAAACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAATTTTACAACAACTCATTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCTCCCATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCTTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTCCTTGTGTTGGAAAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTAAATGCCAATCCCTTTTACGGTTTCGAGTCAGTTCGAATATTTTGGAAGGTCCGGTGCCGGTGGGACTTTTGAGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGAGTGGCGAAATTCCCAATTCTTTTGTTAAAGCGAGGAATCTTTCGGAATTGTTTATGCAGAGTAATAGAATTTCCGGCGTGTTGCCGCCGGAAATTTCTAAAGCTACCAATTTAGTTAAGATTGATCTTAGCAACAATCTCTTGTCTGGTCCAATTCCTTCCGAAATTGGGAATCTCAGAAAGCTTAATTTGTTGCTTTTGCAAGGAAATCACTTGAATTCTTCAATACCCACCTCGCTTTCTGAGCTTAAATCTCTTAATGTTCTTGATTTATCCGATAATCGATTAACGGGTAACATCCCAGAAAGTCTCTGTGAATTGCTACCGAATTCAATCAATTTCTCAAACAATCAACTCTCTGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGAAACCCTGGACTTTGCGTTTCGGTTTATTTAGATTCATCAGATCAGAAATTCCCAATTTGTTCTCAAAATTACAACAAAAATCGATTGGATTCCATCTGGGCAATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATTTAAGACGACGATTCAGCAGAGAAAAATCGATAATGGAACAAGACGAAACACTATCTTCATCGTTCTTCTCATACGATGTGAAAAGTTTCCATCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCGATGGTGGATAAGAACATCGTCGGCCATGGCGGCTCCGGTACGGTGTACAAAATAGAGTTAAGCAGTGGGGAAATCGTAGCCGTTAAAAGGCTGTGGAGTCGAAAGGGGAAAGATACGACGTCGGATCAAGAACAGTTGTATTTGGACAAAGAACTGAAAACAGAGGTGGAAACATTAGGGAGTATAAGGCATAAAAACATAGTGAAATTGTATTGCTATTTCTCAAGCTTGGATTGCAGTTTATTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTGCATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTGGGTATAGCCCAAGGCTTGGCTTACCTTCATCATGATTTGTTGCCTTCTATAATCCATAGAGACATTAAAACCACTAATATTCTCTTAGATGTCAATTATCATCCCAAAGTTGCCGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAACGGGCAAGGATTCTACCACCACCGTCATCGCCGGTACTTACGGCTATCTCGCTCCAGAGTATGCATATTCGTCAAAAGCTACAACAAAGTGCGACGTGTACAGCTTTGGAATCGTGTTGATGGAGCTAATAACAGGAAAGAAACCGGTGGAGGCAGAATTTGGGGAGAACAAGAACATCATATATTGGGTTTCAAACAAAGTAGACACAAAGGAAGGAGCAATGGAAGTATTAGACAAAAGAGTTTCAGGGTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACGTACAAGAATCCAGCCCTTAGACCCACCATGAAGGAAGTGGTTCAACTATTGATTGAAGCTGACCCTTGCAAATTCGATTCTCACAACAAATGCCCCAAACACACCACCACCAAAATCAACAACCCATTTGACCTATGA 2844 41.81 MPLPFYFFFLLSFLSLAIGTDQFQFFSFMQKGVIGNSLPSDWTGNSFCNFTGVSCNQKGLVVGIDLSGRAVSGRFPADVCSYLPELRVLRLGRSGFRGTFPRGITNCSVLEELDMSFLSLTGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLEKLNFNEDNNFNTWQLPESVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPREIGNLKNLRQLELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQFYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGKCQSLLRFRVSSNILEGPVPVGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNRISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSELKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQNYNKNRLDSIWAIGISAFIIFIGAALYLRRRFSREKSIMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCPKHTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27998616 28001958 + ClG42_11g0167500.10 Clacu11g1675 262552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1675 947 FunFam Leucine-rich repeat receptor-like protein kinase 170 272 - -
Clacu11g1675 947 SMART serkin_6 640 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1675 947 Pfam Protein kinase domain 643 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1675 947 SMART LRR_typ_2 276 300 IPR003591 -
Clacu11g1675 947 SMART LRR_typ_2 130 154 IPR003591 -
Clacu11g1675 947 SMART LRR_typ_2 228 252 IPR003591 -
Clacu11g1675 947 SMART LRR_typ_2 492 516 IPR003591 -
Clacu11g1675 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1675 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 SUPERFAMILY L domain-like 245 562 - -
Clacu11g1675 947 FunFam receptor protein-tyrosine kinase CEPR1 623 725 - -
Clacu11g1675 947 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 133 153 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 422 443 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Clacu11g1675 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Clacu11g1675 947 Gene3D Ribonuclease Inhibitor 298 561 IPR032675 -
Clacu11g1675 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Clacu11g1675 947 SUPERFAMILY RNI-like 64 341 - -
Clacu11g1675 947 Gene3D Ribonuclease Inhibitor 24 297 IPR032675 -
Clacu11g1675 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 296 920 IPR051564 GO:0016020(PANTHER)
Clacu11g1675 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1675 947 FunFam leucine-rich repeat receptor-like protein kinase TDR 726 931 - -
Clacu11g1675 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524(InterPro)
Clacu11g1675 947 FunFam Receptor protein-tyrosine kinase CEPR1 276 561 - -
Clacu11g1675 947 Gene3D Transferase(Phosphotransferase) domain 1 726 938 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0766 Clacu-Chr2:8360058 Clacu11g1675 Clacu-Chr11:27998616 1.00E-85 dispersed
Clacu04g0112 Clacu-Chr4:2565004 Clacu11g1675 Clacu-Chr11:27998616 1.20E-56 dispersed
Clacu08g1353 Clacu-Chr8:23572736 Clacu11g1675 Clacu-Chr11:27998616 4.00E-180 dispersed
Clacu11g1675 Clacu-Chr11:27998616 Clacu05g0938 Clacu-Chr5:8315376 1.70E-61 dispersed
Clacu11g1674 Clacu-Chr11:27981494 Clacu11g1675 Clacu-Chr11:27998616 3.10E-95 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73984 PF00069 Pkinase 1.40E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1675 - - - 0.0