Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1685 | ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCGAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAAAGGTTGCCACTACACAAAGTTCTCGAACACCCTTGGATTGTCCAAAATGCAGAGCCCTCTGTGACTGTGTTCTTGAAACAGCTTTCCACCTACTATGGATTTTACCTTTTATTTTGTGGATCTAACGACTTACGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAATAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGGAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGTTTCTCACAAGATTCATTGA | 1437 | 45.79 | MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRLPLHKVLEHPWIVQNAEPSVTVFLKQLSTYYGFYLLFCGSNDLRELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELIAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLVSHKIH | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28089125 | 28095021 | + | ClG42_11g0168500.10 | Clacu11g1685 | 262562 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1685 | 478 | ProSiteProfiles | Protein kinase domain profile. | 31 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1685 | 478 | FunFam | serine/threonine-protein kinase Aurora-1 | 115 | 290 | - | - | |
Clacu11g1685 | 478 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 299 | - | - | |
Clacu11g1685 | 478 | Gene3D | Dynein light chain 2a, cytoplasmic | 323 | 455 | - | - | |
Clacu11g1685 | 478 | Pfam | Profilin | 325 | 455 | IPR048278 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 325 | 338 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 376 | 390 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 408 | 423 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 395 | 404 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 428 | 441 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 351 | 364 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Plant profilin signature | 441 | 454 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Profilin signature | 327 | 336 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Profilin signature | 424 | 437 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Profilin signature | 437 | 454 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Profilin signature | 388 | 402 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Profilin signature | 345 | 354 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PRINTS | Profilin signature | 364 | 384 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | CDD | PROF | 326 | 454 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | SUPERFAMILY | Profilin (actin-binding protein) | 326 | 454 | IPR036140 | - | |
Clacu11g1685 | 478 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 297 | IPR011009 | - | |
Clacu11g1685 | 478 | SMART | serkin_6 | 31 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1685 | 478 | CDD | STKc_Aurora | 30 | 283 | - | - | |
Clacu11g1685 | 478 | FunFam | Profilin | 325 | 455 | - | - | |
Clacu11g1685 | 478 | SMART | prof_2 | 325 | 455 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g1685 | 478 | PANTHER | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | 10 | 291 | IPR030616 | GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER) | |
Clacu11g1685 | 478 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1685 | 478 | ProSitePatterns | Protein kinases ATP-binding region signature. | 37 | 60 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g1685 | 478 | FunFam | Aurora kinase A | 23 | 114 | - | - | |
Clacu11g1685 | 478 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 114 | - | - | |
Clacu11g1685 | 478 | Pfam | Protein kinase domain | 33 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0933 | Clacu-Chr3:12131898 | Clacu11g1685 | Clacu-Chr11:28089125 | 1.20E-18 | dispersed | |
Clacu07g1338 | Clacu-Chr7:28238065 | Clacu11g1685 | Clacu-Chr11:28089125 | 7.80E-53 | dispersed | |
Clacu11g0347 | Clacu-Chr11:3143179 | Clacu11g1685 | Clacu-Chr11:28089125 | 7.30E-56 | dispersed | |
Clacu11g0348 | Clacu-Chr11:3146577 | Clacu11g1685 | Clacu-Chr11:28089125 | 5.50E-47 | dispersed | |
Clacu11g1625 | Clacu-Chr11:27396287 | Clacu11g1685 | Clacu-Chr11:28089125 | 6.60E-37 | dispersed | |
Clacu11g1685 | Clacu-Chr11:28089125 | Clacu05g0800 | Clacu-Chr5:6855902 | 9.40E-37 | dispersed | |
Clacu11g1685 | Clacu-Chr11:28089125 | Clacu05g0241 | Clacu-Chr5:2098757 | 1.70E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73985 | PF00069 | Pkinase | 3.90E-73 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1685 | K08850 | - | csv:101219866 | 586.26 |