Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1685 ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCGAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAAAGGTTGCCACTACACAAAGTTCTCGAACACCCTTGGATTGTCCAAAATGCAGAGCCCTCTGTGACTGTGTTCTTGAAACAGCTTTCCACCTACTATGGATTTTACCTTTTATTTTGTGGATCTAACGACTTACGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAATAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGGAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGTTTCTCACAAGATTCATTGA 1437 45.79 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRLPLHKVLEHPWIVQNAEPSVTVFLKQLSTYYGFYLLFCGSNDLRELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELIAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLVSHKIH 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28089125 28095021 + ClG42_11g0168500.10 Clacu11g1685 262562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1685 478 ProSiteProfiles Protein kinase domain profile. 31 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1685 478 FunFam serine/threonine-protein kinase Aurora-1 115 290 - -
Clacu11g1685 478 Gene3D Transferase(Phosphotransferase) domain 1 115 299 - -
Clacu11g1685 478 Gene3D Dynein light chain 2a, cytoplasmic 323 455 - -
Clacu11g1685 478 Pfam Profilin 325 455 IPR048278 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 325 338 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 376 390 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 408 423 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 395 404 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 428 441 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 351 364 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 441 454 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 327 336 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 424 437 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 437 454 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 388 402 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 345 354 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 364 384 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 CDD PROF 326 454 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 SUPERFAMILY Profilin (actin-binding protein) 326 454 IPR036140 -
Clacu11g1685 478 SUPERFAMILY Protein kinase-like (PK-like) 19 297 IPR011009 -
Clacu11g1685 478 SMART serkin_6 31 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1685 478 CDD STKc_Aurora 30 283 - -
Clacu11g1685 478 FunFam Profilin 325 455 - -
Clacu11g1685 478 SMART prof_2 325 455 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 291 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Clacu11g1685 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1685 478 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Clacu11g1685 478 FunFam Aurora kinase A 23 114 - -
Clacu11g1685 478 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Clacu11g1685 478 Pfam Protein kinase domain 33 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0933 Clacu-Chr3:12131898 Clacu11g1685 Clacu-Chr11:28089125 1.20E-18 dispersed
Clacu07g1338 Clacu-Chr7:28238065 Clacu11g1685 Clacu-Chr11:28089125 7.80E-53 dispersed
Clacu11g0347 Clacu-Chr11:3143179 Clacu11g1685 Clacu-Chr11:28089125 7.30E-56 dispersed
Clacu11g0348 Clacu-Chr11:3146577 Clacu11g1685 Clacu-Chr11:28089125 5.50E-47 dispersed
Clacu11g1625 Clacu-Chr11:27396287 Clacu11g1685 Clacu-Chr11:28089125 6.60E-37 dispersed
Clacu11g1685 Clacu-Chr11:28089125 Clacu05g0800 Clacu-Chr5:6855902 9.40E-37 dispersed
Clacu11g1685 Clacu-Chr11:28089125 Clacu05g0241 Clacu-Chr5:2098757 1.70E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73985 PF00069 Pkinase 3.90E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1685 K08850 - csv:101219866 586.26