Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1685 ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCGAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAAAGGTTGCCACTACACAAAGTTCTCGAACACCCTTGGATTGTCCAAAATGCAGAGCCCTCTGTGACTGTGTTCTTGAAACAGCTTTCCACCTACTATGGATTTTACCTTTTATTTTGTGGATCTAACGACTTACGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAATAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGGAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGTTTCTCACAAGATTCATTGA 1437 45.79 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRLPLHKVLEHPWIVQNAEPSVTVFLKQLSTYYGFYLLFCGSNDLRELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELIAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLVSHKIH 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28089125 28095021 + ClG42_11g0168500.10 Clacu11g1685 262562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1685 478 ProSiteProfiles Protein kinase domain profile. 31 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1685 478 FunFam serine/threonine-protein kinase Aurora-1 115 290 - -
Clacu11g1685 478 Gene3D Transferase(Phosphotransferase) domain 1 115 299 - -
Clacu11g1685 478 Gene3D Dynein light chain 2a, cytoplasmic 323 455 - -
Clacu11g1685 478 Pfam Profilin 325 455 IPR048278 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 325 338 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 376 390 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 408 423 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 395 404 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 428 441 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 351 364 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Plant profilin signature 441 454 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 327 336 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 424 437 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 437 454 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 388 402 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 345 354 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PRINTS Profilin signature 364 384 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 CDD PROF 326 454 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 SUPERFAMILY Profilin (actin-binding protein) 326 454 IPR036140 -
Clacu11g1685 478 SUPERFAMILY Protein kinase-like (PK-like) 19 297 IPR011009 -
Clacu11g1685 478 SMART serkin_6 31 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1685 478 CDD STKc_Aurora 30 283 - -
Clacu11g1685 478 FunFam Profilin 325 455 - -
Clacu11g1685 478 SMART prof_2 325 455 IPR005455 GO:0003779(InterPro)
Clacu11g1685 478 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 291 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Clacu11g1685 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1685 478 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Clacu11g1685 478 FunFam Aurora kinase A 23 114 - -
Clacu11g1685 478 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Clacu11g1685 478 Pfam Protein kinase domain 33 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1685 K08850 - - csv:101219866 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0933 Clacu-Chr3:12131898 Clacu11g1685 Clacu-Chr11:28089125 1.20E-18 dispersed
Clacu07g1338 Clacu-Chr7:28238065 Clacu11g1685 Clacu-Chr11:28089125 7.80E-53 dispersed
Clacu11g0347 Clacu-Chr11:3143179 Clacu11g1685 Clacu-Chr11:28089125 7.30E-56 dispersed
Clacu11g0348 Clacu-Chr11:3146577 Clacu11g1685 Clacu-Chr11:28089125 5.50E-47 dispersed
Clacu11g1625 Clacu-Chr11:27396287 Clacu11g1685 Clacu-Chr11:28089125 6.60E-37 dispersed
Clacu11g1685 Clacu-Chr11:28089125 Clacu05g0800 Clacu-Chr5:6855902 9.40E-37 dispersed
Clacu11g1685 Clacu-Chr11:28089125 Clacu05g0241 Clacu-Chr5:2098757 1.70E-107 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.9e-215 742.7
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.2e-213 736.1
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.2e-213 736.1
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.7e-209 723.8
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.7e-209 723.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT2G19760 73.3 5.2e-54 207.2
Clacu11g0348 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT4G29350 71.0 8.3e-52 199.9
Clacu11g0348 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Clacu11g0348 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Clacu11g0348 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.2e-43 170.2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73985 PF00069 Pkinase 3.90E-73 CL0016 Clacu PK