Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1692 ATGGCGTCGTCTTCGCTTTCTGTGGGGATGATGGCTGTTACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCAGAGCAAGTGGAAGCCCTTGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTTATCAGGGAATGCCCAATTCTCTCCAATATCGAACCAAAGCAGATCAAAGTTTGGTTTCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCACGACTCCAGACTGTGAACAGGAAGCTTACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACGCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAAGTCTTAAAGATTGGCCTTCTTGGTTTCGAGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAGAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTACAGTCCAGAACTTTGTAAGAGCAGAAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGTGTACCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGCTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGCCAAAAATTGAGCAGAGGTTTCAATGAAGCAGTTAATGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAACGCAGTGCTTTGTGCCAAAGCGTCGATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGGTTCTTAAGAGAACACCGGTCGGAATGGGCAGACAGTAGTATTGATGCTTACTCAGCAGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGACGATATGCTCATGCCTGGTGACATCTTCCTTCTCCAACTTTGCAATGGTGTGGAGGAGAATGCAGTTGGTACGTCTGCTGAACTCATCTTTGCTCCAATTGATGCCTCCTTTTCTGATGATGCACCAATTCTACCATCTGGCTTCCGCATCATTCCACTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTTGGACCTGCAGGGAATAGAACTTCTGGTGATTGTGCTGGTCAATCAGGAAATTCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCCGCAATGGCACGACAGTATGTCAGGAGCATTATAGCATCTGTCCAGAGGGTGGCACTGGCTCTTTCCCCTTCGAATTTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAGACGCTTGCTCGTTGGATCTCTCAAAGCTATAGGTGCTATATGGGCATGGAGTTACTGAAGAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGCGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTGTCCTATGAGAAAGCTGTGGCATGGAAGGTGACTTTGGTTTCGAATTCTATCAAAAATGCTTCGTACCGATCAAGATATTGTCATTATCTAGTTCAAGCTCAGTCTCCATTCCTTTTCAATTTTGGAAAAAGGATGTCTCTTTCAGTTCAGTTTCCTCCCATTGTGTAA 2631 45.57 MASSSLSVGMMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAESLKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPTVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVEENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRTSGDCAGQSGNSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWISQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVTLVSNSIKNASYRSRYCHYLVQAQSPFLFNFGKRMSLSVQFPPIV 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28173219 28182525 - ClG42_11g0169200.10 Clacu11g1692 262569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1692 876 CDD bZIP 83 122 - -
Clacu11g1692 876 Pfam START domain 175 383 IPR002913 GO:0008289(InterPro)
Clacu11g1692 876 Gene3D - 210 385 IPR023393 -
Clacu11g1692 876 SMART START_1 174 384 IPR002913 GO:0008289(InterPro)
Clacu11g1692 876 Gene3D - 23 97 - -
Clacu11g1692 876 Pfam Homeodomain 31 89 IPR001356 GO:0003677(InterPro)
Clacu11g1692 876 CDD homeodomain 31 91 IPR001356 GO:0003677(InterPro)
Clacu11g1692 876 SMART HOX_1 28 94 IPR001356 GO:0003677(InterPro)
Clacu11g1692 876 ProSiteProfiles 'Homeobox' domain profile. 26 90 IPR001356 GO:0003677(InterPro)
Clacu11g1692 876 ProSiteProfiles START domain profile. 165 379 IPR002913 GO:0008289(InterPro)
Clacu11g1692 876 SUPERFAMILY Bet v1-like 174 384 - -
Clacu11g1692 876 Coils Coil 100 127 - -
Clacu11g1692 876 CDD START_ArGLABRA2_like 169 384 - -
Clacu11g1692 876 FunFam Homeobox-leucine zipper protein REVOLUTA 31 86 - -
Clacu11g1692 876 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 23 832 IPR044830 GO:0003700(InterPro)
Clacu11g1692 876 SUPERFAMILY Homeodomain-like 30 93 IPR009057 -
Clacu11g1692 876 Pfam MEKHLA domain 710 832 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0014 Clacu-Chr9:223915 Clacu11g1692 Clacu-Chr11:28173219 0.00E+00 dispersed
Clacu11g1692 Clacu-Chr11:28173219 Clacu01g2591 Clacu-Chr1:36186020 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48676 PF01852 START 2.00E-53 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1692 K09338 - csv:101218438 1617.82