Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1695 | ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG | 1053 | 51.28 | MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28196585 | 28197765 | + | ClG42_11g0169500.10 | Clacu11g1695 | 262572 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1695 | 350 | MobiDBLite | consensus disorder prediction | 216 | 242 | - | - | |
Clacu11g1695 | 350 | Pfam | GATA zinc finger | 246 | 280 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g1695 | 350 | ProSiteProfiles | GATA-type zinc finger domain profile. | 240 | 276 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g1695 | 350 | CDD | ZnF_GATA | 245 | 292 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g1695 | 350 | PANTHER | GATA TRANSCRIPTION FACTOR | 39 | 312 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Clacu11g1695 | 350 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 241 | 304 | - | - | |
Clacu11g1695 | 350 | PIRSF | Txn_fac_GATA_plant | 22 | 336 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Clacu11g1695 | 350 | ProSitePatterns | GATA-type zinc finger domain. | 246 | 271 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g1695 | 350 | MobiDBLite | consensus disorder prediction | 143 | 182 | - | - | |
Clacu11g1695 | 350 | FunFam | GATA transcription factor | 236 | 322 | - | - | |
Clacu11g1695 | 350 | SMART | GATA_3 | 240 | 290 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g1695 | 350 | Gene3D | - | 241 | 325 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Clacu11g1695 | 350 | MobiDBLite | consensus disorder prediction | 155 | 171 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0554 | Clacu-Chr1:5564926 | Clacu11g1695 | Clacu-Chr11:28196585 | 3.10E-08 | dispersed | |
Clacu05g2295 | Clacu-Chr5:31336070 | Clacu11g1695 | Clacu-Chr11:28196585 | 3.10E-37 | dispersed | |
Clacu08g0904 | Clacu-Chr8:19128426 | Clacu11g1695 | Clacu-Chr11:28196585 | 6.50E-42 | dispersed | |
Clacu10g1328 | Clacu-Chr10:26279607 | Clacu11g1695 | Clacu-Chr11:28196585 | 3.60E-28 | dispersed | |
Clacu11g0537 | Clacu-Chr11:5044049 | Clacu11g1695 | Clacu-Chr11:28196585 | 1.80E-31 | dispersed | |
Clacu06g0771 | Clacu-Chr6:8995818 | Clacu11g1695 | Clacu-Chr11:28196585 | 1.20E-31 | transposed | |
Clacu07g1325 | Clacu-Chr7:28041612 | Clacu11g1695 | Clacu-Chr11:28196585 | 3.50E-67 | transposed | |
Clacu09g0009 | Clacu-Chr9:206663 | Clacu11g1695 | Clacu-Chr11:28196585 | 1.40E-74 | transposed | |
Clacu11g1695 | Clacu-Chr11:28196585 | Clacu08g1369 | Clacu-Chr8:23727519 | 1.40E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48677 | PF00320 | GATA | 3.20E-15 | CL0167 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1695 | - | - | - | 0.0 |