Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1695 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.28 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28196585 28197765 + ClG42_11g0169500.10 Clacu11g1695 262572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1695 350 MobiDBLite consensus disorder prediction 216 242 - -
Clacu11g1695 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Clacu11g1695 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Clacu11g1695 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Clacu11g1695 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 MobiDBLite consensus disorder prediction 143 182 - -
Clacu11g1695 350 FunFam GATA transcription factor 236 322 - -
Clacu11g1695 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu11g1695 350 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0554 Clacu-Chr1:5564926 Clacu11g1695 Clacu-Chr11:28196585 3.10E-08 dispersed
Clacu05g2295 Clacu-Chr5:31336070 Clacu11g1695 Clacu-Chr11:28196585 3.10E-37 dispersed
Clacu08g0904 Clacu-Chr8:19128426 Clacu11g1695 Clacu-Chr11:28196585 6.50E-42 dispersed
Clacu10g1328 Clacu-Chr10:26279607 Clacu11g1695 Clacu-Chr11:28196585 3.60E-28 dispersed
Clacu11g0537 Clacu-Chr11:5044049 Clacu11g1695 Clacu-Chr11:28196585 1.80E-31 dispersed
Clacu06g0771 Clacu-Chr6:8995818 Clacu11g1695 Clacu-Chr11:28196585 1.20E-31 transposed
Clacu07g1325 Clacu-Chr7:28041612 Clacu11g1695 Clacu-Chr11:28196585 3.50E-67 transposed
Clacu09g0009 Clacu-Chr9:206663 Clacu11g1695 Clacu-Chr11:28196585 1.40E-74 transposed
Clacu11g1695 Clacu-Chr11:28196585 Clacu08g1369 Clacu-Chr8:23727519 1.40E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48677 PF00320 GATA 3.20E-15 CL0167 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1695 - - - 0.0