Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1695 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.28 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28196585 28197765 + ClG42_11g0169500.10 Clacu11g1695 262572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1695 350 MobiDBLite consensus disorder prediction 216 242 - -
Clacu11g1695 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Clacu11g1695 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Clacu11g1695 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Clacu11g1695 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 MobiDBLite consensus disorder prediction 143 182 - -
Clacu11g1695 350 FunFam GATA transcription factor 236 322 - -
Clacu11g1695 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g1695 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu11g1695 350 MobiDBLite consensus disorder prediction 155 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1695 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0554 Clacu-Chr1:5564926 Clacu11g1695 Clacu-Chr11:28196585 3.10E-08 dispersed
Clacu05g2295 Clacu-Chr5:31336070 Clacu11g1695 Clacu-Chr11:28196585 3.10E-37 dispersed
Clacu08g0904 Clacu-Chr8:19128426 Clacu11g1695 Clacu-Chr11:28196585 6.50E-42 dispersed
Clacu10g1328 Clacu-Chr10:26279607 Clacu11g1695 Clacu-Chr11:28196585 3.60E-28 dispersed
Clacu11g0537 Clacu-Chr11:5044049 Clacu11g1695 Clacu-Chr11:28196585 1.80E-31 dispersed
Clacu06g0771 Clacu-Chr6:8995818 Clacu11g1695 Clacu-Chr11:28196585 1.20E-31 transposed
Clacu07g1325 Clacu-Chr7:28041612 Clacu11g1695 Clacu-Chr11:28196585 3.50E-67 transposed
Clacu09g0009 Clacu-Chr9:206663 Clacu11g1695 Clacu-Chr11:28196585 1.40E-74 transposed
Clacu11g1695 Clacu-Chr11:28196585 Clacu08g1369 Clacu-Chr8:23727519 1.40E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1369 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.5e-69 257.7
Clacu11g1695 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 7.9e-67 251.1
Clacu01g2068 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.3e-42 167.5
Clacu10g0225 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.7 4.1e-139 491.9
Clacu09g1326 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
Clacu10g0225 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48677 PF00320 GATA 3.20E-15 CL0167 Clacu TF