Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1698 ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA 645 52.87 MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28226066 28226710 - ClG42_11g0169800.10 Clacu11g1698 262575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1698 214 CDD AP2 35 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1698 214 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Clacu11g1698 214 SMART rav1_2 34 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1698 214 Pfam AP2 domain 34 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1698 214 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1698 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 172 IPR051032 -
Clacu11g1698 214 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677(InterPro)
Clacu11g1698 214 MobiDBLite consensus disorder prediction 1 23 - -
Clacu11g1698 214 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1698 214 MobiDBLite consensus disorder prediction 1 35 - -
Clacu11g1698 214 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1698 214 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0971 Clacu-Chr6:13365941 Clacu11g1698 Clacu-Chr11:28226066 2.00E-49 dispersed
Clacu09g0180 Clacu-Chr9:1744541 Clacu11g1698 Clacu-Chr11:28226066 3.30E-39 dispersed
Clacu10g0247 Clacu-Chr10:3029928 Clacu11g1698 Clacu-Chr11:28226066 7.50E-37 dispersed
Clacu10g1904 Clacu-Chr10:32694403 Clacu11g1698 Clacu-Chr11:28226066 6.60E-24 dispersed
Clacu10g1905 Clacu-Chr10:32703394 Clacu11g1698 Clacu-Chr11:28226066 9.80E-27 dispersed
Clacu11g0366 Clacu-Chr11:3329865 Clacu11g1698 Clacu-Chr11:28226066 4.80E-40 dispersed
Clacu11g1698 Clacu-Chr11:28226066 Clacu11g1746 Clacu-Chr11:28642096 6.10E-20 dispersed
Clacu08g0188 Clacu-Chr8:3808642 Clacu11g1698 Clacu-Chr11:28226066 2.10E-22 transposed
Clacu06g0246 Clacu-Chr6:2891275 Clacu11g1698 Clacu-Chr11:28226066 5.10E-34 transposed
Clacu11g1698 Clacu-Chr11:28226066 Clacu08g1380 Clacu-Chr8:23857461 1.10E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48678 PF00847 AP2 7.90E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1698 K09286 - csv:101217333 275.018