Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1698 | ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA | 645 | 52.87 | MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28226066 | 28226710 | - | ClG42_11g0169800.10 | Clacu11g1698 | 262575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1698 | 214 | CDD | AP2 | 35 | 93 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1698 | 214 | FunFam | Ethylene-responsive transcription factor 2 | 33 | 92 | - | - | |
Clacu11g1698 | 214 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1698 | 214 | Pfam | AP2 domain | 34 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1698 | 214 | Gene3D | AP2/ERF domain | 34 | 92 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1698 | 214 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 16 | 172 | IPR051032 | - | |
Clacu11g1698 | 214 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677(InterPro) | |
Clacu11g1698 | 214 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Clacu11g1698 | 214 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1698 | 214 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Clacu11g1698 | 214 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1698 | 214 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g0971 | Clacu-Chr6:13365941 | Clacu11g1698 | Clacu-Chr11:28226066 | 2.00E-49 | dispersed | |
Clacu09g0180 | Clacu-Chr9:1744541 | Clacu11g1698 | Clacu-Chr11:28226066 | 3.30E-39 | dispersed | |
Clacu10g0247 | Clacu-Chr10:3029928 | Clacu11g1698 | Clacu-Chr11:28226066 | 7.50E-37 | dispersed | |
Clacu10g1904 | Clacu-Chr10:32694403 | Clacu11g1698 | Clacu-Chr11:28226066 | 6.60E-24 | dispersed | |
Clacu10g1905 | Clacu-Chr10:32703394 | Clacu11g1698 | Clacu-Chr11:28226066 | 9.80E-27 | dispersed | |
Clacu11g0366 | Clacu-Chr11:3329865 | Clacu11g1698 | Clacu-Chr11:28226066 | 4.80E-40 | dispersed | |
Clacu11g1698 | Clacu-Chr11:28226066 | Clacu11g1746 | Clacu-Chr11:28642096 | 6.10E-20 | dispersed | |
Clacu08g0188 | Clacu-Chr8:3808642 | Clacu11g1698 | Clacu-Chr11:28226066 | 2.10E-22 | transposed | |
Clacu06g0246 | Clacu-Chr6:2891275 | Clacu11g1698 | Clacu-Chr11:28226066 | 5.10E-34 | transposed | |
Clacu11g1698 | Clacu-Chr11:28226066 | Clacu08g1380 | Clacu-Chr8:23857461 | 1.10E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48678 | PF00847 | AP2 | 7.90E-14 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1698 | K09286 | - | csv:101217333 | 275.018 |