Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1713 ATGGAGGCTCAAAACCTTGCTAGTGATGAATCTGTTTCCTCAGGGCCTTGTATGGATTTTCACCTCAACTTCAACAACATTCAAAATAACCATGAAACTACTTCTGCCAATTCCTCTAATGTGGGATTGGGATTATTGGGAGAAAATGGAGAAGATGGGGCAGTTCATTTACAACAAGATAGCTACCATCAAATCCATCCAAATAGTCATCCAAATAATTCACCCATTGAGGAATTGTTTTTCAAGATCAACCCCAAATACAAGATGGCAGCAGCCACACTCTCACAATCCCATGCCTTCAAGAGAGCTCGAGATGGTGGTCTAATGCATGGTATCGTTAGAGAGGATTCATCGTCGCAGCCTTCTATACGCATCAAGGGTGGAATTGGGAATTGTGGGAGAATGAAGAATCAATCCATTGCTAAGAAGAAAAATCCATCCGATGGCAGGCCTACAAACTCGGTTTATGATATAACATTTGAAGAAGTTGGTCTACCAATCGATCCTCATCTTCAACAAAGAACACGAGGGAAAGGTGATAAATTGACTGTAAAAATGAGTGACAAGAGAGAGAATTCAGCTGATGAGGAAGTTGAAACAAAAGAGATGGATGATAGAAGTTTCACTCCAGATAATCAACCACAGGATGAGCGATACATTCACAAAGTTGGGGTTCCACCCAAGCAAAAACTCTACAAAGAAATCAAATCTGCAGTGAAAGAAACATTTTTCCCGGATGATCCTCTCCGTTCATTCAAGGATCAAACTAAGAGGCGGAAATTTATTCTCGGGGTCCAAGCCGTTTTTCCGATTCTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATTCCACAGGATATTGGGTATGCCAAGCTTGCGAATTTGCCTCCAGAGTACGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACGCTGCTTCAAGCGGAAATCGATTCTGCTGCAAATCCAGAAGACTACAGGCGGCTGGCATTTACAGCTACATTCTTTGCGGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATCAAGAAATTCACAAAGAAAACAGATATTATCTCTGTTATGCAGTCAGTATTTGGCACAATCCGACACGGATGGAACTGGCAGACAATAGTGATTGCTGTAGCCTTCCTTGGCTTCCTTCTATTTGCAAAATTCATTGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTGGTACTGTCTACCATTTTGGTATACATCACTCGTGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAGAAAGGAATCAATCCCCCATCTGTGAAAGACTTATATTTATCAGGCCAATACCTTCCAAAAGGGTTGAAGATCGGTATTGTGGCAGGAATGGTAGCACTGACGGAAGCCGTTGCAATTGGAAGAACGTTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGACTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAACAACAGGATCATTCTCTAGATCCGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCTATTGTAGTACTCCTAACTTTGGCATTCCTCACCCCATTGTTCAAATATACTCCAAATGCAATTCTGTCCGCTATCATCATATCCGCTGTGATCAACCTGGTCGACTTGCATGCTGCGAAACTGATTTGGAAGATAGATAAATTCGATTTTGTTGCTTGTATGGGAGCCTTCCTTGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTATTGCGGTATCCATTTCCTTTGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTTGGAAAGATCCCGAGGACGACTGTTTACCGAAACATACTGCAATATCCTGAAGCAACCCAGGTTCCAGGGGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTCGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACTAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTCAAGAAGAGAGAAATTCAGCTCATTTTAGCAAATCCGGGGCCCGTGGTGATCAACAAACTCCACGCATCGGAATTTGTAGATTTGATAGGCCAAGACCATATCTTCCTCACAGTTGCAGATGCAGTCTCATCTTGTAGTCCAAAGATAATGAACGACGTTTGA 2541 42.27 MEAQNLASDESVSSGPCMDFHLNFNNIQNNHETTSANSSNVGLGLLGENGEDGAVHLQQDSYHQIHPNSHPNNSPIEELFFKINPKYKMAAATLSQSHAFKRARDGGLMHGIVREDSSSQPSIRIKGGIGNCGRMKNQSIAKKKNPSDGRPTNSVYDITFEEVGLPIDPHLQQRTRGKGDKLTVKMSDKRENSADEEVETKEMDDRSFTPDNQPQDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKRRKFILGVQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSAANPEDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQSVFGTIRHGWNWQTIVIAVAFLGFLLFAKFIGKKNKRLFWVPAIAPLISVVLSTILVYITRADKEGVAIVKHIEKGINPPSVKDLYLSGQYLPKGLKIGIVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGLMNVVGSMTSCYVTTGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNAILSAIIISAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATQVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVINKLHASEFVDLIGQDHIFLTVADAVSSCSPKIMNDV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28382739 28392701 + ClG42_11g0171300.10 Clacu11g1713 262590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1713 846 MobiDBLite consensus disorder prediction 116 135 - -
Clacu11g1713 846 ProSiteProfiles STAS domain profile. 715 838 IPR002645 -
Clacu11g1713 846 NCBIfam sulfate permease 270 834 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu11g1713 846 SUPERFAMILY SpoIIaa-like 717 839 IPR036513 -
Clacu11g1713 846 FunFam Sulfate transporter 31 695 841 - -
Clacu11g1713 846 Pfam Sulfate permease family 283 664 IPR011547 GO:0016020(InterPro)
Clacu11g1713 846 CDD STAS_SulP_like_sulfate_transporter 716 831 - -
Clacu11g1713 846 Coils Coil 751 771 - -
Clacu11g1713 846 Gene3D STAS domain 695 841 IPR036513 -
Clacu11g1713 846 MobiDBLite consensus disorder prediction 186 215 - -
Clacu11g1713 846 Pfam STAS domain 716 834 IPR002645 -
Clacu11g1713 846 PANTHER SULFATE TRANSPORTER 239 838 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu11g1713 846 ProSitePatterns SLC26A transporters signature. 312 333 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0892 Clacu-Chr3:11079511 Clacu11g1713 Clacu-Chr11:28382739 9.80E-303 dispersed
Clacu07g0946 Clacu-Chr7:23482694 Clacu11g1713 Clacu-Chr11:28382739 3.60E-180 dispersed
Clacu11g0272 Clacu-Chr11:2458052 Clacu11g1713 Clacu-Chr11:28382739 2.30E-187 dispersed
Clacu09g1592 Clacu-Chr9:27444859 Clacu11g1713 Clacu-Chr11:28382739 4.00E-248 transposed
Clacu09g2047 Clacu-Chr9:35300322 Clacu11g1713 Clacu-Chr11:28382739 1.60E-108 transposed
Clacu11g1713 Clacu-Chr11:28382739 Clacu03g0891 Clacu-Chr3:11037732 2.20E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1713 K17470 - csv:101207370 1197.57