Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1719 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGGGGGAACAGCAGCTGTAAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1092 47.71 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAGGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28458610 28459701 + ClG42_11g0171900.10 Clacu11g1719 262596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1719 363 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 MobiDBLite consensus disorder prediction 286 326 - -
Clacu11g1719 363 CDD AP2 178 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 MobiDBLite consensus disorder prediction 273 326 - -
Clacu11g1719 363 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Clacu11g1719 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 361 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu11g1719 363 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1719 363 SUPERFAMILY DNA-binding domain 179 236 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1959 Clacu-Chr1:31628371 Clacu11g1719 Clacu-Chr11:28458610 4.40E-60 dispersed
Clacu02g1787 Clacu-Chr2:31417300 Clacu11g1719 Clacu-Chr11:28458610 1.90E-27 dispersed
Clacu08g1252 Clacu-Chr8:22508657 Clacu11g1719 Clacu-Chr11:28458610 4.60E-92 dispersed
Clacu11g0441 Clacu-Chr11:4146823 Clacu11g1719 Clacu-Chr11:28458610 8.50E-18 dispersed
Clacu11g0745 Clacu-Chr11:7286009 Clacu11g1719 Clacu-Chr11:28458610 7.40E-22 dispersed
Clacu11g1719 Clacu-Chr11:28458610 Clacu02g1943 Clacu-Chr2:32988310 2.80E-17 dispersed
Clacu06g0810 Clacu-Chr6:9798998 Clacu11g1719 Clacu-Chr11:28458610 2.20E-29 transposed
Clacu11g1719 Clacu-Chr11:28458610 Clacu08g0675 Clacu-Chr8:16157469 5.80E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48679 PF00847 AP2 2.80E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1719 K09286 - csv:101214560 610.912