Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1728 ATGTGTCAAGTTTGTGTTGCAGGTGGGTTCGGCGCGGTCGGAGTGAACTACGGGCTGAACGGCGACGATCTTCCGAAACCGGATGATGTCGTAAGCCTATATAAACGATGTGGAATAAATATTGTGCGAATATTTGAGCCGAACCATGGAGTTCTTGATGCTTTGAAAGGCAAGGAAAACTTAGCCTTGTGGCTAGGAACGAGAAATGAAGACATAGAGGGGTTTGCTACAAACCAAGTAGCGGCCAATGCTTGGGTTAATGATAATGTGGTTCCTTATTATAAGGATGTCAACATTGCTTATATCACCATAGGGAATGAGGTTGTCCCTAACGATGTAGCTGCACCATTTGTCGCCAATGCCATTAAAAATATCATGCAAGGGCTTGTTAATGCCGGCATCAAAAGTGACATCAAGGTGACGACAGTGGTAGCGATGTCAGCATTGGAAGTGTCGTACCCACCTTCAGCCGGAGCATTCACAGTCGCTGCTGCCGGAGTAGTGAAAGACATCGCGACCGTGTTGGGATCTTCAGGTGCACCAATATTGGTGAACGTGTACCCATATTTCGCATACGCATCGAACCCACAACAAATCTCACTCAGTTACGCGCTCTTCACATCCACCGCCCCCGTGGTGGTGGACGGAGATTTACAGTACTTTAATCTGTTCGACGCCATGGTGGATTCATTTTACGCGGCGCTGGAGAAGATTGACGCCGGGGAAGTGAAAATCGAGATTTCGGAGACTGGGTGGCCCAGCAAAGGAAACGAGCCATTCACGAGCCTTGACAATGCATTGACTTATAACAAAAACCTTGTGAAACATGTGACCAGCGGAGTTGGAACCCCTAAAAAGCCTAATCTCCCATACGATGCCGTTTTGTTTGAAATGTTCAATGAGGATCTTAAGGCGGCTGGGGCTGAGCAGAATTTTGGTATCAATCTCTTCAATTCGCTTCTTCCAATTCTCTCTTCGTTCTCGTCGTCTCTCGCATGGCGGACCAATAAGCATAAACTCAATTCACATTCCCTATCCGACGATAATTCGAATCCCCATTTCCCCCAACTTCTCCTCCGATTTCTTCTTCTATCTGCTCTTTTCTCCTACTCCCAACCTTATTGCATTCTTCTCAGACGCATTGCTTTGATACAGCCTACCCTTCAGCAGTTACCCCAACTCCTTTTGTTTTCCCTTCCTTCCAATTTCAATCGCTACTCTGAAGGTCCTGGAATCAAAGTTTATGTTACGCACCATGCTCTAGGAAGTGAACCTACATTAGTTCCAGAGTGGTTGAGAAGTTCTGGAAGTCTTTCTGGGAGTGGAATTTCAGCTCAACAATTTGCATCGTCTTCTTCACACTCAGATATTTCTTCTCAAGCTCATTACTCGAGGAGTAGAACTTCAAAGAGCATTAGCGATATAGATAAACCACATTTTGATTTCTTGGATTGGTCATCTTCATCAACCTCGAGGAGGAGTTCTAGTAATGGCTCTGGAAAGAATGCTTACAGTAGTTTTAATAGGAATCATCGTGATAGAGACCGTGAGAAGGAGAAAGAAATGTCAAATCTTGGGGACCCCTGGGGTTATGACCTTTCTAGCCCTCTGGTAAACATATTTTCCAGTAGAGTTGAGAAGGAAACTTTGCGGCGTTCTCATTCAATGGTATCTAGGAAGCAAGGTGATTTATTTCCTCAAAGAGTTGCTGCTGACTTGAAAAGTGGAGGATATAATCATAAGGCTAACAGTAATGGCTTTCATTCAGGAAGTACCATTAACGGTATCACTGATAAGGCTGTTTTTGACAAGGATTTTCCATCACTTGGATCAGAAGAAAGGCAAGGAGGACCAGATGTAGGGAGAGTATCATCTCCTGGCTTGACCACATCTGTTCAGAGCTTGCCTATTGGGAGTTCAACTTTGATTGGTCGGGAGGGATGGACATCAGCTTTGGCTGAGGTGCCAACTATTGTCACAGGCAGTTCTGCTGCTCCATCATCTGTTCAACAGACTGTTGCTGCCAATTCTGGGTTGGGGTCCCCAAATGCAACAACTCCACGCAAGATGGCTGAAGCTTTAACACAGGCACCAACAAGAGCCCGTGTTACTTCTCAGTCAACTGAGTTATCTGTCAAGACACAGAGGCTTGAGGAATTGGCTATTAAGCAGTCCAGGCAATTAATCCCAGTAACACCTTCAATGCCTAAAGTTTCTGTTCTTAGTTCTTTTGAAAAATCCAAGTCCAAAGGAGCATCCAGAACTGCTGAAATGAATGTGCCTGGCAAGAGCAGTCAACAACAGCTCTCTCTGGTGCAGCATAATAGTCAGCCTCTTCGAGGTGGACAAGTCAAGTCCGATTCTCCAAAAACCACTCATGGGAAGTTTCTGGTTCTCAAACCAGTATGGGAGAATGGTGTGTTAAAGGATGGCTCAAATCCTATTAGTAATGTTAACAGTAGAACTGCAAATTGCCAGCCCTCTTCTGTTGCCTCTTCAGCAACACCTAACACTTCAAGGAACCAAAACAACCTGAATCCTTCATCCTCTCTGGAGCGAAAGGTATCTGCTTTAGATCTGAAATCAGGACCCACTTTGGAAAAGAGACCTCCTTCTGTTCAATCGCAAAGCAGGAATGATTTCTTCAATCTCATAAAGAAGAAAACTTTGGTGAATGGTTCCACTTGTCTACAAGATTCAGGTATCTGCACATCTCCCATCAAGGAAAAATCTGGGACAGTGAATGGGGAAGTAGTTAGTGCCGCAGTACATCCTTCTACTGTTACAGACAATGAGGTAGCTAGCAATGGTGATACCACTGAAGAGGTTCAGAGGTTTTCTGAGGTTGTGAATAAGAGTTTGAGCCCTAACAAAGCATTATGTACAGACGAGGAAGAGGCTGCATTTCTTCGTTCTCTTGGATGGGAAGAAAATTCAGGAGAGGATGAAGGACTAACAGAGGAGGAGATCAATGCTTTTTATCAGCAGTACATGAACCTGAAGCCATCTTTGAAGCCGATCAGATCTGAAGATGGGTACTGCAATTAG 3048 44.72 MCQVCVAGGFGAVGVNYGLNGDDLPKPDDVVSLYKRCGINIVRIFEPNHGVLDALKGKENLALWLGTRNEDIEGFATNQVAANAWVNDNVVPYYKDVNIAYITIGNEVVPNDVAAPFVANAIKNIMQGLVNAGIKSDIKVTTVVAMSALEVSYPPSAGAFTVAAAGVVKDIATVLGSSGAPILVNVYPYFAYASNPQQISLSYALFTSTAPVVVDGDLQYFNLFDAMVDSFYAALEKIDAGEVKIEISETGWPSKGNEPFTSLDNALTYNKNLVKHVTSGVGTPKKPNLPYDAVLFEMFNEDLKAAGAEQNFGINLFNSLLPILSSFSSSLAWRTNKHKLNSHSLSDDNSNPHFPQLLLRFLLLSALFSYSQPYCILLRRIALIQPTLQQLPQLLLFSLPSNFNRYSEGPGIKVYVTHHALGSEPTLVPEWLRSSGSLSGSGISAQQFASSSSHSDISSQAHYSRSRTSKSISDIDKPHFDFLDWSSSSTSRRSSSNGSGKNAYSSFNRNHRDRDREKEKEMSNLGDPWGYDLSSPLVNIFSSRVEKETLRRSHSMVSRKQGDLFPQRVAADLKSGGYNHKANSNGFHSGSTINGITDKAVFDKDFPSLGSEERQGGPDVGRVSSPGLTTSVQSLPIGSSTLIGREGWTSALAEVPTIVTGSSAAPSSVQQTVAANSGLGSPNATTPRKMAEALTQAPTRARVTSQSTELSVKTQRLEELAIKQSRQLIPVTPSMPKVSVLSSFEKSKSKGASRTAEMNVPGKSSQQQLSLVQHNSQPLRGGQVKSDSPKTTHGKFLVLKPVWENGVLKDGSNPISNVNSRTANCQPSSVASSATPNTSRNQNNLNPSSSLERKVSALDLKSGPTLEKRPPSVQSQSRNDFFNLIKKKTLVNGSTCLQDSGICTSPIKEKSGTVNGEVVSAAVHPSTVTDNEVASNGDTTEEVQRFSEVVNKSLSPNKALCTDEEEAAFLRSLGWEENSGEDEGLTEEEINAFYQQYMNLKPSLKPIRSEDGYCN 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28502458 28515786 + ClG42_11g0172800.10 Clacu11g1728 262605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1728 1015 SUPERFAMILY (Trans)glycosidases 13 314 IPR017853 -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 486 506 - -
Clacu11g1728 1015 FunFam glucan endo-1,3-beta-glucosidase, basic 13 320 - -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 507 525 - -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 811 852 - -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 606 631 - -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 486 528 - -
Clacu11g1728 1015 Gene3D Glycosidases 13 319 - -
Clacu11g1728 1015 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 423 1005 - -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 742 793 - -
Clacu11g1728 1015 MobiDBLite consensus disorder prediction 758 790 - -
Clacu11g1728 1015 Pfam Glycosyl hydrolases family 17 13 314 IPR000490 GO:0004553(InterPro)|GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1728 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1341 Clacu-Chr3:26089015 Clacu11g1728 Clacu-Chr11:28502458 3.40E-61 dispersed
Clacu03g1558 Clacu-Chr3:29176806 Clacu11g1728 Clacu-Chr11:28502458 3.00E-58 dispersed
Clacu11g1727 Clacu-Chr11:28497035 Clacu11g1728 Clacu-Chr11:28502458 2.70E-93 tandem
Clacu01g0897 Clacu-Chr1:10443992 Clacu11g1728 Clacu-Chr11:28502458 2.60E-19 transposed
Clacu11g1728 Clacu-Chr11:28502458 Clacu03g0908 Clacu-Chr3:11541952 6.20E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g330 . . . . Bpe02g00082 . . Bma01g02637 Cmo04g02433 Cmo15g00734 Cma01g01407 Cma09g00662 . . . Cpe06g00518 . . . . . . . . . . . . . . . . . . . Lsi04g02363 Csa04g01832 . . Blo17g00198 Blo18g00201 Bda11g00747 Bda13g01502 Bpe02g01618 Bpe14g00363 Bma01g00845 Bma02g00242 . Cmo01g01457 Cmo09g00647 . . Car04g02246 Car15g00660 Cpe01g02020 Cpe02g00535 Bhi09g02636 . . . . . . Cla11g01513 Cam11g1573 Cec11g1602 Cco11g1600 Clacu11g1728 Cmu11g1547 Cre11g1963 . . Chy07g00685 Cme07g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006749 0 4 0 0 0 0 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 7 3 0 37