Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1749 ATGGGAGCTGAATCAGGGCTTGCAATGTTTTGTGGAATAATTCATAAAATAAAACCCTACTTAGCTATGATTTCCTTGCAATTTGGATATGCAGGGATGTATATTGTCACGATGCTTTGTCTTAAGAAGGGCATGAACCATTACGTTCTCGCCGTTTATCGACACGTCGTTGCCACCATTGTCATCTCTCCCTTCGCCATCGTCCTCGAAAGAAAAATAAGGCCAAAGATGACATTCCCAATCTTTGCACGAATATTGCTCCTCGGTTTTCTCGAGCCAGTGTTGGATCAAAATCTATACTATGTGGGTTTGAAACTTACTTCAGCAACATTCACTTCTGTCACCATCAATATTCTCCCTGCAGTAACCTTCATTATGGCTCTCATTTTCAGGCTAGAAAGTGTGAATTTGAAGAAGATTCGTAGCATCGCGAAGGTGGTAGGAACATTGGTGACAATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATATTCCACGGCCATGGACGCCACGCCGCCCACCACAGTACTGAGTCCGCCGACCAGCACTGGGTCCTCGGAACCCTCATGCTTCTCGGCAGCATCGTCGGCTGGTCCGGTTTCTTCATCTTGCAATCCTTCACACTGAGGAAATACCCGGCGGAGCTGTCGTTGACCGCCCTGATATGCGTGGCCGGCACGGTGGAGGGCTCCATTGTGACGCTTATTATGGAGCGTGACTTTAGCGTGTGGGCCATTGGCTGGGACTCTCGCCTTCTTGCCGCTGTTTATACCGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGAGTGGTGATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACCGCCGTCCTTGGCTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATCGGAGCTATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTAAACAAATTGACGAATCAAAAAAGCGGCGCCACCACCACCGAATTACCGATCACCGCCGAGCCGGAAACCACCGCCACCGCCGAGCGTTGTTCTTCCAAGGCTCCACCGGCGTGA 1125 49.16 MGAESGLAMFCGIIHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHVVATIVISPFAIVLERKIRPKMTFPIFARILLLGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNLKKIRSIAKVVGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHHSTESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGTVEGSIVTLIMERDFSVWAIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAVLGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHLNKLTNQKSGATTTELPITAEPETTATAERCSSKAPPA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28669297 28672210 + ClG42_11g0174900.10 Clacu11g1749 262626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1749 374 MobiDBLite consensus disorder prediction 349 374 - -
Clacu11g1749 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 333 - -
Clacu11g1749 374 PANTHER WAT1-RELATED PROTEIN 21 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu11g1749 374 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020(InterPro)
Clacu11g1749 374 Pfam EamA-like transporter family 23 149 IPR000620 GO:0016020(InterPro)
Clacu11g1749 374 MobiDBLite consensus disorder prediction 349 367 - -
Clacu11g1749 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2041 Clacu-Chr9:35246459 Clacu11g1749 Clacu-Chr11:28669297 1.20E-84 dispersed
Clacu11g1455 Clacu-Chr11:25686556 Clacu11g1749 Clacu-Chr11:28669297 1.60E-55 dispersed
Clacu11g1749 Clacu-Chr11:28669297 Clacu11g1782 Clacu-Chr11:29030665 2.80E-36 dispersed
Clacu01g1095 Clacu-Chr1:16150223 Clacu11g1749 Clacu-Chr11:28669297 5.90E-58 transposed
Clacu02g1517 Clacu-Chr2:28630346 Clacu11g1749 Clacu-Chr11:28669297 4.70E-60 transposed
Clacu04g0634 Clacu-Chr4:20021859 Clacu11g1749 Clacu-Chr11:28669297 6.00E-99 transposed
Clacu06g0898 Clacu-Chr6:11773614 Clacu11g1749 Clacu-Chr11:28669297 4.70E-71 transposed
Clacu06g1087 Clacu-Chr6:19980089 Clacu11g1749 Clacu-Chr11:28669297 2.00E-58 transposed
Clacu11g1504 Clacu-Chr11:26195377 Clacu11g1749 Clacu-Chr11:28669297 4.70E-93 transposed
Clacu11g1749 Clacu-Chr11:28669297 Clacu08g0702 Clacu-Chr8:16778760 2.70E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1749 - - - 0.0