Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1750 ATGCGATCATTCACAATTGGGCGTAGATTCATGGAGCCTCCGGCTGAGCAATCGGGGAATGCGACGGAAGTTGGCGCCACTGAGATCGGCAAACGGGAGCTCAGAAGTGTTCGCCGTAAACTGGTACAGTCTACGCTGCTTCCTCACAAGCCTCAAGAACAGGAGGAGAATGGAGTCGATCAAGAGGAGGAGAATAATTGCGGCGAGGAGGCGGAATTATGTGGGAGTCAGGGCAAGAAGAAAAGGAAGTCGCAGGTGAAGAAGACGCCTCAATCGAGAAGTTCAAAGAAGGCGAAGGAAAAGCGAGCAGTAAACTTGACGCCAAAGAAAATTTTGCATTTTGAAGAGGCAACTCCCACAATTCCCGACTTGCGTCTGGAGGCAAAAATGACTAGAGAGGAAAATTCACGGATGTTTGCAGGAAGGCAAATACATCCCTTCTTTTCATCCCTAAAAGCAGGGAAGAAAAGTCAAGAGGCAACTCAATCGGCAGAGAGAGGGTGTACTGTTGAGAAAAAGGAAAGTAGAATGGACTGTAATCCCATCCACGTCTATGAAGAAACTGGGGATGATGAACCATCTCCAGACTGGAAAAACTGGACTTTCACTGACAGAAATATTATACATAATGGCCATATATTACAAAAAGCTTGTTCATCAGTATTTGAAGGCTCTGTTAAGTCTTTAAGTTTAGATGACCTTCCCATTGTGTTGCCACCCTCGGATTCTACTCCTGGTACAAACAAGGACCCCATGGATCATGATTCCATCGAGCAAGAATGCACTAAAGAGTTAACGTCAACTGTATACAATGTGGATGCTGAAAAGGAAATAATGCTCCATCACCTCCTAAGTAGTGCAGAAATGGATGATAACTTGAATAATACACGTGGGCTTAGTGATTCTGAAGCAAGGCCAATTCTTGAGCATCAAAGTAGATTTCTTCAGGACAGAATGCAGTCCTACTACCTTCGTTGTCAAAGCTGTACCAAAAATTGTTTATGGACATACAAATATCAGCCGAAGATGGCTATGGAGGTATGTGGTAATCTCGAATCAGTAAAGTTCTTGAGTGAGTGGCTACACCTCTGGTATGAAAGAAATTCACAGAACAACAAAGATTTTGGTGGAGGGAATAAATTCCAGAAGCAAGATAACAATGGTTACTGTTCTCGGAGTGATTCTGACTATGAAAGTCCGGATGGAGAGGATAGCCTGACGAATGTTCTCCTTGTCACGGGATCATCTGGGAGTGGGAAATCTGCGGCCATTTATGCTTGTGCTGAAGAGCATGGTTTCAGGGTTTTTGAGTTCAGTGCATCTGTCATTCGATCAGGAGCTGTTCTCAAGCAGATGATTGGAGAGGCTTTACAATCTCATCAGCTAAAATGGTCAGTAAAAAATTCCCAGGGATCAAGGAACAATTTTATTGAGAAATCCTCCTCTCTTCAAGAGAGTACAGCAGCCAAATGTTTAGCGAGTGAGTTGATTGAACTCATCCCTTTGTCAGACGACGATTCTAAAGATTACATTAAAGGTGTTGGAGAATTTGAAGACATCGGATCTGGAAGCCTCAGCAACCAAGGTGAAGCCAAGCCTTTAATTCTTTTAGAGGACGTGGATATCATTTTTCTTGAGGATCGAGGTTTTATTTCTGCAATTCAAGAGATTGCTGACACAGGAAAGGGACCCATAATTTTGACCAGCAATAGTAGCGATCCTGTTCTCCCTGATAATTTGAATAGGCTACAGGCCTCTTTTACACGACCATCATCAATGGAACTACTCAGCCATTTGTATAAGATTTGTGCTTCTGAAGGAGTCAGCATCCAACCATACTTACTTGAGCGCATTATTCATTATTGCCACAGAGATATACGGAAAACCATTATGCATCTTCAGTTCTGGTGCCAGGGTACAAGATTTAGAGATAAAATTCAGAAAAAGTATGGTTCACTTTTATTTGATATTGATGCTGGCCATCAGATACTGCCGGTGATAATGCCGTGGAGTTTCCCATCTCAGTTATCAGAGGTAGTTGACAAAGAGATAACAAAGTCGTTATTAGAAATGGAAACAACTTGCTTGCTGGAGGCAAGTGAAGGTGAATTTAAAAAAGAGGAAATGCAGAATGGTCTGGACTACCAAAATTATGAAGACAACTATCTTTTAGACGCCAAGAAGGCAGCAATGATGAGTAGGAATGGCTCGATTCAAGATCACAATGAATTTGCAGCTGAGTTTGATGCTGCACATGAGTGTTCTGATGTTTCAGGAACCCCTATTCCTTTATCTGGGAAGAAGCACCGAAGAAGGCTGGATATGGTAGTGTCTTCTGATTCTGAAGATGTTCCCATCACCAAGGAATGTTCTTTAGTACCAAATAAAGATGACGGTATATTATCATCTCACCATCAAATATCTCCAAATTACTCAAGCCCATTAAACGGGCTGCTTTATCATATGGTAGATAATACTGTTGAAGATTATTATCCAACTTCAGAAACTGCAGGAGGTATGCATGTGAATGAGATGTCCATGTCTCTCACTACCTCATATGTACCAGAATCAATTTTTGTTCCTGAGACTGAAATTCATGATATGGAGTTGTTTCCCAAAATGTTATCCCATGGTGACGGTGCCAGTCCAGAAGTTTCTATGGACGAGCTTTTTCAGAATGTGTTAGCAGTTGAACCCAATAGTTTTTGTTCACCTACACATACTGTACAAGAAACCACAGCTGTTTTGGAAGATACTTGCAACGTATTTAATTTTTCTCGTCTAGAGGGGGAAGGATTTTCTTGTCATGGACATATAGAAAACATTATCAGAGGGTATCCTGTGATGGATGAGTGCAGCCGTGTAGACTTTAACGAGTCCAAGTTTGTAGAGAAACCTGAATTGAGTGTGCCGGGTGATTCAGTGCATGAATTGTGGAAACAACTTCGCCTCGGTCGATTAGATTTTCTAGGACATCATGTCCCACTCCCACCAGAAAAGAAAGAAACCTGTCAGATCGTCAAACTAGTTCATGGAATGAGCCATCTAATATCAGATTCGGACCTGCTTTCTTCCTGCCGACCACAAGATATGTTGGAGACGCCAACACTTATGTCTGAGGAATCAGACTCATTTGACTGGGGAGGTGAGCAACTGCAGATGGCATCTACAATTGCTCAGCATGGATTTAGCCTGATTGCTAATGATATTAGTACCATGGGTTCTCAAGTTGGCTTTGGTAGCAATGTGGATATCGTATCAGAAATGCTTGCCTCTGCAACTAATACAGCAGCATTGGGTAAATTGTTGAGGCATAATATGATGGAAAGCTCCTCTTCCACTAAGAAGATTTTGAATCTGGGCCTTCCAGGAAATAGTCATATGCAAGAGAGAATTATGAAATCACGCCTCTTCGACGTAATTCGGCAGGTGGCTCCAGACAGATCGTTTTTGGCACTGAAAGGTGTTCAATTCTTCGAATATCTTTCTTCATTGCGTTGCATTTCAAGATCAGAGGCTTTACGTTTATCAAAAGGCACTAATAAGATGAAACGACGGAGAGGACGAGTTGCACGACATTACTTGAGTACCGGTTCTCATCTGTTCTCCCCTGAAGATATAACATTGCTGGGACAATCTAAGCTTCCATATAAAGATATTCAAGGATGTTAA 3672 42.02 MRSFTIGRRFMEPPAEQSGNATEVGATEIGKRELRSVRRKLVQSTLLPHKPQEQEENGVDQEEENNCGEEAELCGSQGKKKRKSQVKKTPQSRSSKKAKEKRAVNLTPKKILHFEEATPTIPDLRLEAKMTREENSRMFAGRQIHPFFSSLKAGKKSQEATQSAERGCTVEKKESRMDCNPIHVYEETGDDEPSPDWKNWTFTDRNIIHNGHILQKACSSVFEGSVKSLSLDDLPIVLPPSDSTPGTNKDPMDHDSIEQECTKELTSTVYNVDAEKEIMLHHLLSSAEMDDNLNNTRGLSDSEARPILEHQSRFLQDRMQSYYLRCQSCTKNCLWTYKYQPKMAMEVCGNLESVKFLSEWLHLWYERNSQNNKDFGGGNKFQKQDNNGYCSRSDSDYESPDGEDSLTNVLLVTGSSGSGKSAAIYACAEEHGFRVFEFSASVIRSGAVLKQMIGEALQSHQLKWSVKNSQGSRNNFIEKSSSLQESTAAKCLASELIELIPLSDDDSKDYIKGVGEFEDIGSGSLSNQGEAKPLILLEDVDIIFLEDRGFISAIQEIADTGKGPIILTSNSSDPVLPDNLNRLQASFTRPSSMELLSHLYKICASEGVSIQPYLLERIIHYCHRDIRKTIMHLQFWCQGTRFRDKIQKKYGSLLFDIDAGHQILPVIMPWSFPSQLSEVVDKEITKSLLEMETTCLLEASEGEFKKEEMQNGLDYQNYEDNYLLDAKKAAMMSRNGSIQDHNEFAAEFDAAHECSDVSGTPIPLSGKKHRRRLDMVVSSDSEDVPITKECSLVPNKDDGILSSHHQISPNYSSPLNGLLYHMVDNTVEDYYPTSETAGGMHVNEMSMSLTTSYVPESIFVPETEIHDMELFPKMLSHGDGASPEVSMDELFQNVLAVEPNSFCSPTHTVQETTAVLEDTCNVFNFSRLEGEGFSCHGHIENIIRGYPVMDECSRVDFNESKFVEKPELSVPGDSVHELWKQLRLGRLDFLGHHVPLPPEKKETCQIVKLVHGMSHLISDSDLLSSCRPQDMLETPTLMSEESDSFDWGGEQLQMASTIAQHGFSLIANDISTMGSQVGFGSNVDIVSEMLASATNTAALGKLLRHNMMESSSSTKKILNLGLPGNSHMQERIMKSRLFDVIRQVAPDRSFLALKGVQFFEYLSSLRCISRSEALRLSKGTNKMKRRRGRVARHYLSTGSHLFSPEDITLLGQSKLPYKDIQGC 1223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28679231 28688993 + ClG42_11g0175000.10 Clacu11g1750 262627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1750 1223 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 52 1215 IPR004582 GO:0000077(PANTHER)|GO:0003682(PANTHER)|GO:0003689(PANTHER)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0033314(PANTHER)
Clacu11g1750 1223 MobiDBLite consensus disorder prediction 375 394 - -
Clacu11g1750 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 642 IPR027417 -
Clacu11g1750 1223 Gene3D - 332 588 IPR027417 -
Clacu11g1750 1223 MobiDBLite consensus disorder prediction 375 403 - -
Clacu11g1750 1223 Gene3D - 590 652 - -
Clacu11g1750 1223 MobiDBLite consensus disorder prediction 1 103 - -
Clacu11g1750 1223 MobiDBLite consensus disorder prediction 80 95 - -
Clacu11g1750 1223 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 592 653 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1750 K26118 - - csv:101216488 1960.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g277 . Blo12g00671 . Bda03g00534 . Bpe04g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01807 . . . . . . . . . . . . . . . . . . . Bhi09g02667 . . . Hepe01g2278 Mch11g0825 . Cla11g01532 Cam11g1591 Cec11g1620 Cco11g1621 Clacu11g1750 Cmu11g1566 Cre11g1982 . . Chy07g00650 Cme07g00858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37