Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1754 ATGCTAGTCGAGTCTACCCATCCCCAGAGTTTTCTCAAGGTGAATTTCGATGTGGCAATTTTTATTGGTAAGGTTCTTCTAGAACTCTTGAAGCTTACATCTCCCCTCTTTGCGCTGAAACTAATTCACAAATTGTTTGGAACTATTTGGTTGGAAAATCTAGATACAAGAATGAGCCTTGCTCCGCTACTCGCCTTCTCCAGCCTTTATTTCCCGAATCACCGGTTTTGCTATAACTTCATCAAAGAAGAAGAAAACCTAGAAAAGATTACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTGTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACACCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA 822 45.74 MLVESTHPQSFLKVNFDVAIFIGKVLLELLKLTSPLFALKLIHKLFGTIWLENLDTRMSLAPLLAFSSLYFPNHRFCYNFIKEEENLEKITGASGPGSDSEAILVVNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28716475 28722496 - ClG42_11g0175400.10 Clacu11g1754 262631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1754 273 SUPERFAMILY F1F0 ATP synthase subunit C 195 264 IPR035921 -
Clacu11g1754 273 SUPERFAMILY F1F0 ATP synthase subunit C 122 185 IPR035921 -
Clacu11g1754 273 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 111 267 - GO:0016021(PANTHER)
Clacu11g1754 273 CDD ATP-synt_Vo_c_ATP6C_rpt1 121 188 - -
Clacu11g1754 273 FunFam V-type proton ATPase proteolipid subunit 119 270 - -
Clacu11g1754 273 PRINTS Vacuolar ATP synthase 16kDa subunit signature 215 241 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 PRINTS Vacuolar ATP synthase 16kDa subunit signature 242 265 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 PRINTS Vacuolar ATP synthase 16kDa subunit signature 138 162 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 PRINTS Vacuolar ATP synthase 16kDa subunit signature 164 188 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 CDD ATP-synt_Vo_c_ATP6C_rpt2 197 264 - -
Clacu11g1754 273 Pfam ATP synthase subunit C 125 184 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 Pfam ATP synthase subunit C 205 263 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 NCBIfam V-type ATPase subunit C 121 229 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu11g1754 273 Gene3D - 119 270 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1611 Clacu-Chr8:25910172 Clacu11g1754 Clacu-Chr11:28716475 3.00E-75 dispersed
Clacu08g1612 Clacu-Chr8:25913956 Clacu11g1754 Clacu-Chr11:28716475 3.00E-75 dispersed
Clacu11g1754 Clacu-Chr11:28716475 Clacu05g1865 Clacu-Chr5:27870995 1.20E-12 dispersed
Clacu11g1754 Clacu-Chr11:28716475 Clacu08g1455 Clacu-Chr8:24593408 7.10E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1754 K02155 - ath:AT1G19910 287.345