Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1759 ATGGACGGCTATTACGCATTCTCATCGATCTCAACGATTTTTTCTGGATCTGGAGTTGTTGATGTTGCTCATGATGCTTCTCCCTGTTTTTCATCTCCATCGGTTTGGAATCGGATGGATATGGCGGCCATGATTAGGAGGGGATCCAAGGTGGACGAGCTTCAATTGGTGACTCTTTGTAGAGAGCGGAAGGAGTTAATCAAAGCCGCGTCTCGTCATCGTTATGCTCTTGCTGCAGCTCATGTTACGTATTTTCAGTCTCTCAAAGACATTGGTGAAGCTATACGCAAATTTGTTGATGAAGAGATTGTGATCTCTGGTGCTGAATCATCATCCTCTCATGGCTCTCCTGTTCTTACACTGCCTTCCGATGAAGGGAAAGGGAACGGGAAGAAACCGAAATCGGGTGAGAAACACATACACTCGTCTTCTTCTTCCTCGGTTTTACATTCTGCTTCGATAACACACGATCCCTCTCCTCACGAGGACGAGATTGACGGTTCTCACTTGCATTCATCATCTGGATCGGAGTCTGAATCTGAACACAATTCTTCAGGTCATATTCATATCGAGGATAGCCCATTACATGATGAAGGTTATAGCCATCCTCCTTATGCTTTTCCGCCAAGGGATATCCCAGTACAAGATGAAGATTATAGCCATCCTCCTTATGCTTATCCGCCCAGAGATTTCCCAGTACAAGATGAAGGATATAGCCATCCTCATGGTTATCCGCCAAGGGATATCCCAGTACCAGTTGAAGGTTATAGCCATCCTCCTTATGCTTATCCGCCTAGGGAAATCCCAGTACAAGTTCAAGGTTATAGCCATCCACCTCCTCATGCTTATCCCCCAAGGGATTGGAGTTCTTCAACAAATACATACACCTATTATATGCAGAAGTCAACCGCTCCGGCGACAACTGTAATGTATGATGCGCCGGAAACACATACAGCTTCAGATGGGCAGTGGCCTGGTCCATCGTACAGTTATCCGCCCTATCCACAGTATGGAAACAGTGGGTTCTATGGGTTTTCAATGGGTTCACCACCGGATTATTATAACATGACCAATCAGCAGCCAAAGCGCCCTGCTACTCCACCGCCCCCGCCTTCTCCACCGAAGGTCTCTGCTTGGGATTTTATGAATGTTTTTGATGGCTATGATAATGGTTACCAGGATTATAATTCGGCAAATAGATATGCGTATGGCTCCATTCAGAGCAGTCCTGATTCCAATGAAGTGAGGGAGAGAGAAGGGATACCTGAATTGGAAGATGAAACAGAGCCTGAAGCTCTGAAAGAAATTAAAGAGAGGAAGAAATTGAAGGTGGAGGCGATGAACAAGAATCTGAATTCAGGGGAGGGAACTTCAAAGTCTGTACCACCACAGAGTAGTGAGGAAAGCTCAAAATCTCTGCCAGTGCCAAATACTGGTAGCTCATCGGTATCTAAGGATAAGGGCGTAAATAACAGCCCCGATACAGTCGTGTCGAAGAAATCGGAACAGGAGGAGCCAGTGGAGAAGAAAGAGGTGAGTTTCGAGATTGAGGAGAATTCGACATTGGATATTGAATCTTCCAAGAAAAGTAATTTAGCCACATTTGCGGCCTTTGGTACAAGGGATCTCCAGGAAGTTGTGAGTGAAATTAAGGATGAATTTGAAGCTGCTTCTAGCTATGGGAAAGAGGTTGCCATGTTGCTTGAAGTGGGGAGATTGCCTTATCGGTCTAAGATCACTGTACTTAAAGTTATTCTTTCTCGGATCCAGTACTTGGTGTCCCCTTCCACAGCATCTGCTCAGCCGCCATTGGTTTGGTTGGACCCTAAGACAGTGAAAATGGCCAAAGCCTACTCTGGGTCTAGCAGTCCTGGCGATGAGTTTGACTTGAAATCTAGAAGCCTTTCATCTACGCTGGAGAGGCTTTATGTATGGGAGAAGAAACTGTATAAAGAAGTTAAGGATGAAGAAAAGTTACGTGTTATTTATGAGAAATTGTGCAAAAAGTTGAAAAGGTTAGATGAACATGGGGCTGATTCCACTAAAATCGATGCTACTCATGCCTCTATTAGAAAATTGTCAACCAAGATCGACGTCTGTATCAAAGCCGCTGATGCTATATCAAGCAGGATCCATAAGTTGCGGGATGAAGAATTGCAGCCCCGATTAACTGAACTTATTCATGGGTGGATAAGAATGTGGAGTTCCATTCTCAAATGTCACCAGAAGCAATTTCAAGCAGTTATGCAGAGTAAAATTCGCTCATTAAAAGCTAGAACTGGCTCTAGAAGAGATGAAAGTTTGAAAGCTACTGTCGATCTCGAAATGGAACTCGTCAATTGGTGCACCAGATTTAACAATTGGATTCGCACCCAAAAAGCTTATGTCGAATCTTTAAATGGATGGCTCCTACGATGCCTGAACAATGAGCCTGAAGAAACGGCTGATGGGGTTGCTCCTTTTTCACCAAGTCGGATGGGCGCTCCGCCAATTTTCATTATTTGCAACGATTGGCACCAAGCTATGCTTGAAATTTCAGAAGATAAAGTGGTTGGTGCCATTCATGGTTTTGCTTTAAACTTGCATGAGTTATGGGAAAGGCAAGATGAGGAACAACGTCAGAGAATCAAAGCCAATTTCCTTTACAAGGATTTTGAAGAACACCTTAGAACCTTGAAAATGGAGAGAGCAATGATAAAATCTGACCAAGATGATGCAGCAGGAGGAACTGCACTGTCAAAAGTTCCTTCTGAAAATGGAATTTCACCGCCGGATGATCTGAAAGCTAATTTAGATTCATTGAGGAAGAAGTTATATGATGAAAGAGCAAAACACAAGGATGCCATTAAACTGGTTCACAACGCTGCTTCAAGTAGCATACAAGCAGGTTTGGTTCCAATTTTTGAGGCTTTGGAAAAATTCAGTTCCGAAGTCATGAAAGCTCATGAGCAACAGGTTGCTTGTGATCGGGAGATACTCTACAACATACCGGCACTTGCAAATCCCGTCTCCGGAACGTCCGATTCCCAGGAGTTCGTCGTCGAGTTGGATCATTCTAACTTCACCGACTTCGTAAGCAAGCTCGATTTCCTTATCGTCTCCTTCTACACTCTGGGTTGTGGACACTGTAAGAAGTTGGCACCGGAGTATGAAAAAGCTGCTAATATCCTGAGTAAGCATAATCCTCCTCTGGCTCTAGCAAAAGTTAACATTGCAAATGAAGCAAACGAGGGACTTGCTGGATCCGATGGCTCCATTTCTATTAAGATTGTGAGAGAGGGGGGTAAGAATGTTCAAGAATACAAGGGTCCTTATGATGCAGATGGTATTGTTAAATATGTAAAGAGACAGTATGGACCTGCCTCTGTTGAAATAAGAACTCTGGAGGATGCCCAAATTTTCTTATCTGACAATAAGATTGCTATTGTTGGCATATTCCCTCAATTTTCTGGGGGGAAGTTTGAAAACTATACTATCCTAGCCAAGAAATTGCGTCCTACTGAGGAATTTTTTCATACTTCAGATGCCAAACTTCTTCCTCGTGGTGAATCATCTGTCACTGGTCCCTTAATGAGGGTATTCAAGCCATTCGATGAGCTCTATGTTGATACTCAGGATTTTGACGTGAATGCTCTCGAGAAATTTGTTGAAAAATCAATCGTACCTACTGTAACTATCATGGATGGCGACCAGAAAAATCAACGTCTAGTTGACAATTTCATGTATAATTCAAATTCAAAGGTCATGTTGTTTATAAATTTTAACAGTGAGATTGCTGCTTCATTTAAGTACAAGTATCGTGAACTTGCGGAGCTATACAAAGGAGATAGCCTCAGTTTTCTGATGGCAGATATTCATGTTAGTTCTCATTCGATTAAGCAATATGGAATTAAGGATGATCAAATACCTTTTATTATCCTACTAAGTGATAAAACAAAGTATCTGAAATCCAATGTGGAGCCTGGTGAGCTTTCTCCTTGGTTGAAAAAATATAAGAATGGAGAATTGGAACCATACATAAAATCTGAACCTATACCAGAGCATAATGACGAACCTGTGAAAGTGGTGGTAGCTCACACATTTCAGGACGTAGTTTTCAACTCAAGGAAGAATGTTCTGCTTGAGTTTTATGCTCCTTCACATAAAGACTGCAAAGAGCTGGCTTCAGTCTTTGAGGATCTTGCCATCTCATACCAAAGAGATCCTGATGTTATAATTGCTAAATTCGATATTTTTGCAAATGACTTACTACATGACTTCGAAATCTGGACACTCCCTACTGTTTACTTCAAATCGGCCGATGGGAACATATCGCCATACACCGGGTATGCAACGAAGGAAGACTTAAGAGATTTCATTGAAAAGAATAGGTTTAAAATTGCTGATGAACATTTGGATATGAATGATGAGCTCTAA 4416 42.39 MDGYYAFSSISTIFSGSGVVDVAHDASPCFSSPSVWNRMDMAAMIRRGSKVDELQLVTLCRERKELIKAASRHRYALAAAHVTYFQSLKDIGEAIRKFVDEEIVISGAESSSSHGSPVLTLPSDEGKGNGKKPKSGEKHIHSSSSSSVLHSASITHDPSPHEDEIDGSHLHSSSGSESESEHNSSGHIHIEDSPLHDEGYSHPPYAFPPRDIPVQDEDYSHPPYAYPPRDFPVQDEGYSHPHGYPPRDIPVPVEGYSHPPYAYPPREIPVQVQGYSHPPPHAYPPRDWSSSTNTYTYYMQKSTAPATTVMYDAPETHTASDGQWPGPSYSYPPYPQYGNSGFYGFSMGSPPDYYNMTNQQPKRPATPPPPPSPPKVSAWDFMNVFDGYDNGYQDYNSANRYAYGSIQSSPDSNEVREREGIPELEDETEPEALKEIKERKKLKVEAMNKNLNSGEGTSKSVPPQSSEESSKSLPVPNTGSSSVSKDKGVNNSPDTVVSKKSEQEEPVEKKEVSFEIEENSTLDIESSKKSNLATFAAFGTRDLQEVVSEIKDEFEAASSYGKEVAMLLEVGRLPYRSKITVLKVILSRIQYLVSPSTASAQPPLVWLDPKTVKMAKAYSGSSSPGDEFDLKSRSLSSTLERLYVWEKKLYKEVKDEEKLRVIYEKLCKKLKRLDEHGADSTKIDATHASIRKLSTKIDVCIKAADAISSRIHKLRDEELQPRLTELIHGWIRMWSSILKCHQKQFQAVMQSKIRSLKARTGSRRDESLKATVDLEMELVNWCTRFNNWIRTQKAYVESLNGWLLRCLNNEPEETADGVAPFSPSRMGAPPIFIICNDWHQAMLEISEDKVVGAIHGFALNLHELWERQDEEQRQRIKANFLYKDFEEHLRTLKMERAMIKSDQDDAAGGTALSKVPSENGISPPDDLKANLDSLRKKLYDERAKHKDAIKLVHNAASSSIQAGLVPIFEALEKFSSEVMKAHEQQVACDREILYNIPALANPVSGTSDSQEFVVELDHSNFTDFVSKLDFLIVSFYTLGCGHCKKLAPEYEKAANILSKHNPPLALAKVNIANEANEGLAGSDGSISIKIVREGGKNVQEYKGPYDADGIVKYVKRQYGPASVEIRTLEDAQIFLSDNKIAIVGIFPQFSGGKFENYTILAKKLRPTEEFFHTSDAKLLPRGESSVTGPLMRVFKPFDELYVDTQDFDVNALEKFVEKSIVPTVTIMDGDQKNQRLVDNFMYNSNSKVMLFINFNSEIAASFKYKYRELAELYKGDSLSFLMADIHVSSHSIKQYGIKDDQIPFIILLSDKTKYLKSNVEPGELSPWLKKYKNGELEPYIKSEPIPEHNDEPVKVVVAHTFQDVVFNSRKNVLLEFYAPSHKDCKELASVFEDLAISYQRDPDVIIAKFDIFANDLLHDFEIWTLPTVYFKSADGNISPYTGYATKEDLRDFIEKNRFKIADEHLDMNDEL 1471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28794450 28805719 - ClG42_11g0175900.10 Clacu11g1759 262636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 403 514 - -
Clacu11g1759 1471 Pfam Protein of unknown function (DUF630) 47 102 IPR006868 -
Clacu11g1759 1471 CDD PDI_b'_family 1233 1332 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 903 926 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 353 375 - -
Clacu11g1759 1471 CDD PDI_a_family 1014 1114 - -
Clacu11g1759 1471 Gene3D Glutaredoxin 1108 1213 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 182 198 - -
Clacu11g1759 1471 Gene3D Glutaredoxin 1214 1347 - -
Clacu11g1759 1471 Gene3D Glutaredoxin 1003 1107 - -
Clacu11g1759 1471 Pfam Thioredoxin 1013 1115 IPR013766 -
Clacu11g1759 1471 Pfam Thioredoxin 1353 1455 IPR013766 -
Clacu11g1759 1471 ProSiteProfiles Thioredoxin domain profile. 1331 1458 IPR013766 -
Clacu11g1759 1471 Gene3D Glutaredoxin 1348 1460 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 430 446 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 140 154 - -
Clacu11g1759 1471 Pfam Protein of unknown function (DUF632) 543 862 IPR006867 -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 156 170 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 498 514 - -
Clacu11g1759 1471 SUPERFAMILY Thioredoxin-like 1123 1229 IPR036249 -
Clacu11g1759 1471 SUPERFAMILY Thioredoxin-like 1320 1456 IPR036249 -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 450 497 - -
Clacu11g1759 1471 SUPERFAMILY Thioredoxin-like 1238 1350 IPR036249 -
Clacu11g1759 1471 Pfam Thioredoxin-like domain 1151 1329 - -
Clacu11g1759 1471 ProSitePatterns Thioredoxin family active site. 1032 1050 IPR017937 -
Clacu11g1759 1471 SUPERFAMILY Thioredoxin-like 1013 1120 IPR036249 -
Clacu11g1759 1471 CDD PDI_b_family 1122 1218 - -
Clacu11g1759 1471 PANTHER UNCHARACTERIZED 47 986 - -
Clacu11g1759 1471 MobiDBLite consensus disorder prediction 107 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1759 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0361 Clacu-Chr2:3324482 Clacu11g1759 Clacu-Chr11:28794450 6.50E-56 dispersed
Clacu02g1133 Clacu-Chr2:22016691 Clacu11g1759 Clacu-Chr11:28794450 1.10E-93 dispersed
Clacu07g1303 Clacu-Chr7:27863366 Clacu11g1759 Clacu-Chr11:28794450 8.40E-30 dispersed
Clacu08g1114 Clacu-Chr8:21104625 Clacu11g1759 Clacu-Chr11:28794450 1.20E-49 dispersed
Clacu09g0213 Clacu-Chr9:1957303 Clacu11g1759 Clacu-Chr11:28794450 1.90E-28 dispersed
Clacu11g1381 Clacu-Chr11:24296673 Clacu11g1759 Clacu-Chr11:28794450 2.20E-54 dispersed
Clacu11g1759 Clacu-Chr11:28794450 Clacu08g0727 Clacu-Chr8:17119788 3.80E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35