Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1761 ATGGCGGAGATAGCGGTGTTCGACGGAGAAGCGGCGGAGAGAGTGGTGGCGGAGCTGAGGGAGAGCTATAATTCCGGCAAAACGCGAAGCTACGAATGGAGAGTGAATCAATTGAAAAATCTGTTGAAATTGGTTTGTGAAAACGAAGAAGAGATGGTTCAAACCGTTCATTCCGATCTTTATAAACCCGAATTTGAAGCCTTCGCTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGGAGCAATTGTTCCAGAACCTTTCGGTGTCGTCCTTATCATTTCTGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAAAACTTTTGGCGAAATATTTGGATACATCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTAATGCTTTGTTGGAGCAGAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGGATAGTGATGGCAGCTGCTGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCTCCTGACTATATCATAACACCGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTTAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATCGTGCATGGAGGTGAAAAGGACAAAACAAAGCTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCCTACTTCCCATTGTCACGGTCGACAAGGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACTAACAAAAAGAAGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACGATTAGCACGTTACCGTTCGGAGGAGTTGGAGAGAGTGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCATAAGAAGGCCGTTCTTTATCGAAGTTTCGCAGGCGATGCGCCGATGAGATATCCGCCATACACAAAGGGAAAGCTCAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGTTGGTCATAA 1455 44.05 MAEIAVFDGEAAERVVAELRESYNSGKTRSYEWRVNQLKNLLKLVCENEEEMVQTVHSDLYKPEFEAFAHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSGAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLAKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIIAGKWGCNNGQACIAPDYIITPKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIVTVDKVEDSFEIVNSGTKPLAAYLFTNKKKLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28824151 28831005 + ClG42_11g0176100.10 Clacu11g1761 262638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1761 484 Pfam Aldehyde dehydrogenase family 2 441 IPR015590 GO:0016491(InterPro)
Clacu11g1761 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Clacu11g1761 484 PIRSF ALDH 2 474 IPR012394 GO:0006081(InterPro)
Clacu11g1761 484 PANTHER ALDEHYDE DEHYDROGENASE 11 482 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Clacu11g1761 484 CDD ALDH_F3FHI 12 443 - -
Clacu11g1761 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 20 439 IPR016162 GO:0016491(InterPro)
Clacu11g1761 484 FunFam Aldehyde dehydrogenase 221 421 - -
Clacu11g1761 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
Clacu11g1761 484 FunFam Aldehyde dehydrogenase 20 224 - -
Clacu11g1761 484 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1761 K00128 - - csv:101219329 867.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0896 Clacu-Chr7:22507523 Clacu11g1761 Clacu-Chr11:28824151 2.60E-134 dispersed
Clacu11g1761 Clacu-Chr11:28824151 Clacu11g1762 Clacu-Chr11:28834580 3.50E-233 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1094 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Clacu02g1708 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Clacu06g1798 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.2e-153 539.3
Clacu06g1798 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.1e-250 861.7
Clacu02g1708 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 8.2e-247 849.7
Clacu06g1094 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 3.1e-161 565.5
Clacu02g1708 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 6.1e-170 594.0
Clacu06g1798 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 5.9e-165 577.4
Clacu06g1094 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Clacu11g1761 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 1.6e-181 632.9
Clacu11g1762 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 5.2e-177 617.8
Clacu11g1762 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.7e-176 615.1
Clacu11g1761 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 3.5e-176 614.8
Clacu02g2374 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Clacu07g0896 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 6.8e-184 640.6
Clacu02g2374 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Clacu02g1921 . 37 694 Aldehyde Dehydrogenase Gene Family AT1G79440 57.4 1.1e-203 706.4
Clacu09g1690 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 4.8e-240 827.4
Clacu01g1896 . 285 719 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.3e-181 632.5
Clacu06g1775 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.8 7.8e-252 866.3
Clacu06g1775 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 1.1e-253 872.5
Clacu02g1749 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Clacu01g1519 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 7.9e-261 896.3
Clacu06g0444 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.1e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56