Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1762 ATGTCGGAAACGAAGGTGTTCGATGCGGCGGCGGCGACGGAGTTGGTGAAGGAACTGAGAGGTAGTTTTGGCTCCGGCAACACTCGGAGCTACGAGTGGAGAGTGGCGCAGCTTGAGAGTCTCTTGAAGCTCAGCGTTGACCATGAGGAAGATATTTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGCGTTGGAATCCGTTATTCATGAGATATCTATGGTAAAAAGTTCGTGTAAATTGGCACTTAAAGAACTCAGAAATTGGATGACACCAGAGAAGGTTCAAACTACAATTACCAGTTTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTGGGTGTTGTGCTGATCATCTCCGCTTGGAATTATCCATTCTATTTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCTCCAGCAACAGCATCTTTAATAGCAAAACTTCTTGAGAAGTATTTGGATACGTCTGCTGTAAAAGTTGTTGAGGGTGCTATTCCTGAAACTAGTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTTGCCTGTAGGCGAATTATATCTGGTAAATGGGGTGGTAACAATGGACAAGCATGTGTTTCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAATCTAAAGATATATCTCGCATTGTGAATGCTAGCCACTTTAATCGCTTGACCAAGCTCTTAGATGATGATGAAGTTTCTAGCAAGATTGTTCATGGAGGTGAAAAGGACAAAACCAAATTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCTTTGATTATGACGGAGGAGATATTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGACAGCTTCGAAATAGTGAATTCGGGCTCAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAAGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGCGGCGTGGTTATCAATGACACCACCTTACATCTAGCTGTTAGCACACTACCATTTGGAGGAGTAGGGGAGAGTGGAATGGGATCTTGCCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAAGCTGTTCTTTATCGAAGTTTTGTAGGCGACGTGCCGATGCGATACCCACCTTACACAAACGGAAAGCTTAGATTTCTCAAAGCTCTTCTTGGAGGTGGCATTTTGGAGCTCATTCGTGCCCTTCTTGGTTGGTCGTAA 1455 43.78 MSETKVFDAAAATELVKELRGSFGSGNTRSYEWRVAQLESLLKLSVDHEEDICDALRSDLSKPALESVIHEISMVKSSCKLALKELRNWMTPEKVQTTITSFPSSAAIVPEPLGVVLIISAWNYPFYLSLDPVVGAIAAGNAVVLKPSEISPATASLIAKLLEKYLDTSAVKVVEGAIPETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIISGKWGGNNGQACVSPDYIITTKEFAPKLVESLKQELERFYGKNPLESKDISRIVNASHFNRLTKLLDDDEVSSKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGSKPLAAYLFTNNKKLKEQFVACISAGGVVINDTTLHLAVSTLPFGGVGESGMGSCHGKFSFDAFSHKKAVLYRSFVGDVPMRYPPYTNGKLRFLKALLGGGILELIRALLGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28834580 28839738 + ClG42_11g0176200.10 Clacu11g1762 262639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1762 484 SUPERFAMILY ALDH-like 14 458 IPR016161 GO:0016491(InterPro)
Clacu11g1762 484 Pfam Aldehyde dehydrogenase family 8 441 IPR015590 GO:0016491(InterPro)
Clacu11g1762 484 PIRSF ALDH 1 476 IPR012394 GO:0006081(InterPro)
Clacu11g1762 484 FunFam Aldehyde dehydrogenase 20 224 - -
Clacu11g1762 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Clacu11g1762 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 439 IPR016162 GO:0016491(InterPro)
Clacu11g1762 484 PANTHER ALDEHYDE DEHYDROGENASE 11 482 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Clacu11g1762 484 FunFam Aldehyde dehydrogenase 221 421 - -
Clacu11g1762 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0112 Clacu-Chr9:1026048 Clacu11g1762 Clacu-Chr11:28834580 2.00E-14 dispersed
Clacu11g1761 Clacu-Chr11:28824151 Clacu11g1762 Clacu-Chr11:28834580 3.50E-233 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1762 K00128 - csv:101219569 884.404