Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1775 ATGATTCTCAAGCGGGAAAAGCAAAACCCTATTTGCTGTGCAGTGGAGGGTGGATCAAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATAGTAGGGCTCCCTTTTTTCCTTGCTTTCGTTTCACTAGTTTCTCAGAATGTGTTGCATTATCTCAACCATCGTTCATTTCTCCGATTGACAGTCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTGGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTATCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAGCTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTTGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1161 44.1 MILKREKQNPICCAVEGGSKWRHCCRALNHGWRNSRAPFFPCFRFTSFSECVALSQPSFISPIDSRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGSFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28970258 28977355 + ClG42_11g0177500.10 Clacu11g1775 262652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1775 386 Gene3D - 226 289 - -
Clacu11g1775 386 Pfam Replication factor C C-terminal domain 291 375 IPR013748 -
Clacu11g1775 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 271 IPR027417 -
Clacu11g1775 386 FunFam Replication factor C subunit 5 59 224 - -
Clacu11g1775 386 CDD AAA 76 216 - -
Clacu11g1775 386 Gene3D - 290 380 - -
Clacu11g1775 386 FunFam Replication factor C subunit 4 226 289 - -
Clacu11g1775 386 Gene3D - 63 223 IPR027417 -
Clacu11g1775 386 CDD HLD_clamp_RFC 224 283 IPR047854 -
Clacu11g1775 386 SUPERFAMILY post-AAA+ oligomerization domain-like 290 379 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Clacu11g1775 386 FunFam Replication factor C subunit 4 290 379 - -
Clacu11g1775 386 Pfam RCF1/5-like, AAA+ ATPase lid domain 235 272 - -
Clacu11g1775 386 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 66 382 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Clacu11g1775 386 SMART AAA_5 91 224 IPR003593 GO:0016887(InterPro)
Clacu11g1775 386 Pfam ATPase family associated with various cellular activities (AAA) 95 223 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0345 Clacu-Chr10:4362770 Clacu11g1775 Clacu-Chr11:28970258 2.00E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1775 K10755 - csv:101221224 584.334