Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1777 ATGCTGAAGCCGAAACCCTTCATCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGTCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGATGCAAGTTGCTAGGTCCTCAGTGTGTGATGTCATGTGCAAAAGAGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCTAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGAAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACAAAGAAAACACCAATAATTGTATTGCGAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCCAGTAAAACGAGCACCATCGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAGTGACAGAGGAAACAATTCAAGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCGTGGTTCCAAATGGGAATTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAGGAAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCAATTCTGCTGTCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCTGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCCGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2874 42.03 MLKPKPFIGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCKLLGPQCVMSCAKEYRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEASQSTSMFSDASHFINEVDVEVPVGMGKNKENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKASKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSVTEETIQEKSETNVSGDRTMKLSQKSQQCVANGTNKSQEKMRRDFVVPNGNSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMRKKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28988723 29005619 - ClG42_11g0177700.10 Clacu11g1777 262654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1777 957 CDD BRCT_TopBP1_rpt3 360 444 - -
Clacu11g1777 957 SUPERFAMILY BRCT domain 57 185 IPR036420 -
Clacu11g1777 957 SUPERFAMILY BRCT domain 363 447 IPR036420 -
Clacu11g1777 957 Pfam twin BRCT domain 654 715 IPR001357 -
Clacu11g1777 957 Pfam twin BRCT domain 191 243 IPR001357 -
Clacu11g1777 957 Pfam twin BRCT domain 103 166 IPR001357 -
Clacu11g1777 957 MobiDBLite consensus disorder prediction 881 919 - -
Clacu11g1777 957 ProSiteProfiles BRCT domain profile. 182 261 IPR001357 -
Clacu11g1777 957 Gene3D BRCT domain 186 261 IPR036420 -
Clacu11g1777 957 Gene3D BRCT domain 647 740 IPR036420 -
Clacu11g1777 957 SUPERFAMILY BRCT domain 554 639 IPR036420 -
Clacu11g1777 957 ProSiteProfiles BRCT domain profile. 550 637 IPR001357 -
Clacu11g1777 957 SUPERFAMILY BRCT domain 615 734 IPR036420 -
Clacu11g1777 957 CDD BRCT 103 170 - -
Clacu11g1777 957 SMART BRCT_7 552 627 IPR001357 -
Clacu11g1777 957 SMART BRCT_7 647 723 IPR001357 -
Clacu11g1777 957 SMART BRCT_7 97 174 IPR001357 -
Clacu11g1777 957 SMART BRCT_7 363 443 IPR001357 -
Clacu11g1777 957 SMART BRCT_7 184 251 IPR001357 -
Clacu11g1777 957 Gene3D BRCT domain 24 94 IPR036420 -
Clacu11g1777 957 ProSiteProfiles BRCT domain profile. 361 453 IPR001357 -
Clacu11g1777 957 MobiDBLite consensus disorder prediction 504 534 - -
Clacu11g1777 957 FunFam Transcription coactivator 548 643 - -
Clacu11g1777 957 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 774 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Clacu11g1777 957 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Clacu11g1777 957 Pfam BRCA1 C Terminus (BRCT) domain 366 439 IPR001357 -
Clacu11g1777 957 MobiDBLite consensus disorder prediction 515 534 - -
Clacu11g1777 957 FunFam Transcription coactivator 343 453 - -
Clacu11g1777 957 Gene3D BRCT domain 342 450 IPR036420 -
Clacu11g1777 957 Gene3D BRCT domain 97 185 IPR036420 -
Clacu11g1777 957 SUPERFAMILY BRCT domain 185 262 IPR036420 -
Clacu11g1777 957 CDD BRCT_TopBP1_rpt2_like 185 251 - -
Clacu11g1777 957 Gene3D BRCT domain 547 643 IPR036420 -
Clacu11g1777 957 FunFam Transcription coactivator 97 185 - -
Clacu11g1777 957 FunFam Transcription coactivator 36 94 - -
Clacu11g1777 957 ProSiteProfiles BRCT domain profile. 650 733 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1777 K10728 - - csv:101212525 1677.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44