Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1780 ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATCGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 639 39.12 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29023710 29027798 + ClG42_11g0178000.10 Clacu11g1780 262657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1780 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu11g1780 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g1780 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 Pfam K-box region 82 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g1780 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu11g1780 212 Coils Coil 77 111 - -
Clacu11g1780 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2028 Clacu-Chr5:29240730 Clacu11g1780 Clacu-Chr11:29023710 8.60E-34 dispersed
Clacu05g2617 Clacu-Chr5:33934204 Clacu11g1780 Clacu-Chr11:29023710 1.50E-14 dispersed
Clacu11g1657 Clacu-Chr11:27790692 Clacu11g1780 Clacu-Chr11:29023710 9.10E-23 dispersed
Clacu11g1780 Clacu-Chr11:29023710 Clacu10g0813 Clacu-Chr10:14118870 6.50E-06 dispersed
Clacu11g1780 Clacu-Chr11:29023710 Clacu07g1610 Clacu-Chr7:30661794 2.30E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48683 PF01486 K-box 1.20E-18 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1780 K09264 - csv:101222239 408.297