Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1782 ATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGTCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTATCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTTTTTTGTTTGTTCCGCGACTTGTTGGCTCTCGCGATTCTTTCCCCTGTCGCCTATGTTCGGGAGAAGCGGATTCGTTTGCCCATGACTCGAGACCTCCTCATATCGTTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTCGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTAAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACCCTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGTCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCACATAGCGAAATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAGTATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGAGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCCTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCCGGAGTTTTTGCATCTGCGATCAACTATGGACTCTTGACATGGTGCAATAAAATATTAGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACATGGGCGTCACATAGGGAACGACAAACGACTCCGGTTTTGCTACCGCATTCAACCAGGTCCTCCGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTGTCTTTAATGTTCTTCAACTGGATGGTTTCTGGGTTTCCGGCCTGAGGGCTTTTAGCTTAATCTTTTCCTGCAGATCCGGCGTGATTTCTTAA 1281 44.96 MAAAVGGGSGNVGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILSPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHRERQTTPVLLPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSVFNVLQLDGFWVSGLRAFSLIFSCRSGVIS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29030665 29038076 - ClG42_11g0178200.10 Clacu11g1782 262659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1782 426 PANTHER WAT1-RELATED PROTEIN 22 359 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu11g1782 426 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 163 - -
Clacu11g1782 426 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 351 - -
Clacu11g1782 426 Pfam EamA-like transporter family 209 345 IPR000620 GO:0016020(InterPro)
Clacu11g1782 426 Pfam EamA-like transporter family 22 143 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1749 Clacu-Chr11:28669297 Clacu11g1782 Clacu-Chr11:29030665 2.80E-36 dispersed
Clacu11g1782 Clacu-Chr11:29030665 Clacu08g1626 Clacu-Chr8:26046610 2.90E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1782 - - - 0.0