Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1806 ATGAAAGATGAGAACGACGAAGAAATGCTCGTTGAGAGTGAACATCAACTACAAACGACGAAACAGATAAGAGACGATGAGGAGAAGAGTAATACAAAACGAATCGGTTTTCAGGTTTCATTTTTCTTGCAGCAGCTCGTTGTTACCAGATTACTATATGTTCAAGAAAGCCATTCCTGTATTTGGTATCTCAGATGGTTTGTTGTAATTGTATTATGCTTGACTGGTGTCACCATGGGCTTCTGTACCGTAAAATGGCAATGGCTACTGATTCTTCACATTGTGCCGCTTTGTATGTTAATGAGCAGAAGCAGGGGTATCAGTTCTGATGGCGAGGCACTCTTGAGCTTCAGAGCATCAATTATTGATTCTGATGGTGTTCTTCTTCAATGGAAGCCAGAGGAACCCCATCCTTGTAAATGGAAAGGAATAACATGTGATCCAAAAACCAAGAGAGTGATATATTTGAGTCTTCCTTATCACAAACTTAGTGGATCGCTATCCCCCGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTAGGGAATCTTTCGGCACTTAAAAACTTAGACATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTCGGGAAGTTGAGCAAGCTTATTAGTTTAAACGTGTCTGCCAATTTTCTGGTTGGATCAATTCCAAATGTTGGCGTGCTACTCGACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAAAAGGGACCTGAAACTAATGAGTCACCATTCTCAGTGGAAAATCAAATTGGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTCTAGTGCTGGATGGTTGTGGAGGTGCTCGTGCTGCGGGTGTAATGTTTCATGGAGACTTGCCATACGTATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTGTAAAATTGAATGAGGGCTTTGATCGTTTTTTTGAGAGAGAGCTCGAAATTCTTGGAAGCATTAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGGCCTCCGTACTGAATTGTCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCCCCGCGGATAATTCACCGAGACATAAAATCAAGCAACATTTTACTTGACGCTAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTTTTAGAGGATGAAGAATCGCACATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACAGATGCTTCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTAGTCACAGAGAATCGACAACGAGAAATAGCTGACTTACAGTGCGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTATCGGTTGCCATCCAATGTGTTTCGTCGAATGCAGAGGATCGACCAACCATGCATAGGGTAGTCCAGATATTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 2031 41.75 MKDENDEEMLVESEHQLQTTKQIRDDEEKSNTKRIGFQVSFFLQQLVVTRLLYVQESHSCIWYLRWFVVIVLCLTGVTMGFCTVKWQWLLILHIVPLCMLMSRSRGISSDGEALLSFRASIIDSDGVLLQWKPEEPHPCKWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLISLNVSANFLVGSIPNVGVLLDFSESSFLGNRGLCGKQINVMCKDDKKGPETNESPFSVENQIGKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDGCGGARAAGVMFHGDLPYVSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGLRTELSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADLQCEGMQAESLDALLSVAIQCVSSNAEDRPTMHRVVQILESEIMTPCPSDFYDTD 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29224899 29238892 - ClG42_11g0180600.10 Clacu11g1806 262683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1806 676 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 465 671 - -
Clacu11g1806 676 SUPERFAMILY L domain-like 108 271 - -
Clacu11g1806 676 Pfam Protein kinase domain 391 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1806 676 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 107 269 - -
Clacu11g1806 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1806 676 ProSiteProfiles Protein kinase domain profile. 389 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1806 676 Pfam Leucine rich repeat N-terminal domain 108 147 IPR013210 -
Clacu11g1806 676 SUPERFAMILY Protein kinase-like (PK-like) 377 660 IPR011009 -
Clacu11g1806 676 ProSitePatterns Protein kinases ATP-binding region signature. 395 421 IPR017441 GO:0005524(InterPro)
Clacu11g1806 676 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 265 662 IPR050647 -
Clacu11g1806 676 SMART serkin_6 389 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1806 676 Gene3D Phosphorylase Kinase; domain 1 367 464 - -
Clacu11g1806 676 Gene3D Transferase(Phosphotransferase) domain 1 465 667 - -
Clacu11g1806 676 Gene3D Ribonuclease Inhibitor 107 294 IPR032675 -
Clacu11g1806 676 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
Clacu11g1806 676 Pfam Leucine Rich Repeat 225 246 IPR001611 GO:0005515(InterPro)
Clacu11g1806 676 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 362 464 - -
Clacu11g1806 676 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1132 Clacu-Chr7:25947298 Clacu11g1806 Clacu-Chr11:29224899 1.20E-227 dispersed
Clacu11g1806 Clacu-Chr11:29224899 Clacu11g1898 Clacu-Chr11:30011244 1.60E-82 dispersed
Clacu11g1806 Clacu-Chr11:29224899 Clacu01g1511 Clacu-Chr1:27209011 1.90E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73988 PF00069 Pkinase 1.20E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1806 - - - 0.0