Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1847 ATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGTGAATCCGATGAAGGAAAAGTTGTTCGAGAAGTCTGTGCAAATGGGGTCTGCATTAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCGTCACTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGCATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCGTTACTGAGAAGATGCCTCCAAAAAAAGGACGTGCTCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTTGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAACCTGTGCTAGGATCCAGAAAGGATTTGCTGTATTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGTAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTATCTCTTTGTTATTTTGCAGCAGGTCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCGGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAACAATTCCATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGTTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGGCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAGGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTATCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAGAGAGCTGAAGGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTACATTAATGCTCTCCTACTCGAACCGTCTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCAGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGATGAAGGACGAATGGCCGATGCCATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2127 43.25 MTSTVDEDDREPAMESGESDEGKVVREVCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVTEKMPPKKGRARSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNETCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLSLCYFAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIENEEHLKGVGLRLLGLCLGKQAKMASSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29593598 29598136 - ClG42_11g0184700.10 Clacu11g1847 262724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1847 708 SUPERFAMILY TPR-like 316 498 IPR011990 GO:0005515(InterPro)
Clacu11g1847 708 Gene3D Tetratricopeptide repeat domain 647 704 IPR011990 GO:0005515(InterPro)
Clacu11g1847 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515(InterPro)
Clacu11g1847 708 MobiDBLite consensus disorder prediction 1 22 - -
Clacu11g1847 708 SUPERFAMILY TPR-like 512 697 IPR011990 GO:0005515(InterPro)
Clacu11g1847 708 Gene3D Tetratricopeptide repeat domain 38 215 IPR011990 GO:0005515(InterPro)
Clacu11g1847 708 PANTHER PROTEIN NPG1 13 706 IPR043376 -
Clacu11g1847 708 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
Clacu11g1847 708 SMART tpr_5 596 629 IPR019734 GO:0005515(InterPro)
Clacu11g1847 708 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Clacu11g1847 708 SMART tpr_5 666 699 IPR019734 GO:0005515(InterPro)
Clacu11g1847 708 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Clacu11g1847 708 FunFam NPG1 553 702 - -
Clacu11g1847 708 Pfam Tetratricopeptide repeat 39 91 - -
Clacu11g1847 708 Pfam Tetratricopeptide repeat 650 693 - -
Clacu11g1847 708 Gene3D Tetratricopeptide repeat domain 557 643 IPR011990 GO:0005515(InterPro)
Clacu11g1847 708 Gene3D Tetratricopeptide repeat domain 246 547 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0461 Clacu-Chr5:3841420 Clacu11g1847 Clacu-Chr11:29593598 1.10E-158 dispersed
Clacu08g1814 Clacu-Chr8:27417977 Clacu11g1847 Clacu-Chr11:29593598 4.70E-149 dispersed
Clacu11g1847 Clacu-Chr11:29593598 Clacu07g0114 Clacu-Chr7:1596540 1.40E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1847 K21843 - csv:101206641 1339.71