Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1854 ATGATTATGGAGCAGTTAAGATACTGCCTCCTTCAAATCTTTGTTGCTTTAGCTATTTCATTTCTGGTTTCTGCACAGGATCAATCAGGATTCATTAGCATCGACTGTGGAAGTTCAGAGAATTCAAGCTACAAAGATAGTGTAACAGACATAAAGTACATTTCCGATGTAAACTTCACACAAACTGGAATAAGTAAGAGCATATCATTAGATTTCAACACCACCACTCTTCCACAGCAGTTCTGGTATGTTAGAAGCTTTCCTGAAGGAGAGAGAAACTGTTACACCATAAAGCTTGCTCAGGGTAAAGGTTACAAGTATTTGATCAGAGCGAGTTTCATGTACGGAAACTATGATGGCCAAGGTACAGCGCCGGCTTTCGATCTGTACATGGGTGTTAATAAATGGGATTCAGTAATACTGCACAATGAATCCAGCATCATAATCAAAGAAGTTATACATGTACTTCCTACATCTTCCATATACATTTGTCTGGTCAATACTGGCTTTGGATCACCTTTTATATCAGCATTGGAGCTTAGGCTTTTGAAAAATGCAAGTTATGTCACTGATTTTGATTTGCTAGCTCTCCACAGACGGTTGGATGTTGGTTCAACGACCAACAGAACCATCAGGTACAATGATGATTTTTCTGATAGGATCTGGATGCCCTATAACTTTCTTAACTATAAAATTATAAGTACTTCATCCACAGTTGATTCAGGAGGTAGCAATTCTTATAATCTACCAAGAATTGTCATGAGCACTGCCATCACAACCTATAATGCCAGTGATCCTCTAGAATTTCACTGGGTTCCTGAAGATCCCAGTACAAAATATCATATATTCTTGCACTTTGCTGATTTGGAAAAGCTCCAAGCTAACCAATTAAGGGAATTTAACATCTATCAAAATGGGAATTATCTTCATGGACCATTCTCTCCTGATTACTTGCAGTCAACTACATTGTCTAGCATATCCCCAATGAGTGGAGATGACATTGCATTTTCATTATCAAAAACTAATGCATCAAATCTTCCACCCATCCTCAATGCACTTGAAATCTACATCGTGCTTGACACATCGCAATCACGCACCGATGAACAGGACATTACAGCCCTGATGAACATCAAATCCTTTTATGGATTGAGAAAGAATTGGCAGGGTGATCCATGCCAGCCAAAATCCTTCTTGTGGCTTGGTCTTAATTGTAGCTATGATGACCAGAGTCCTAATAGAATCACCTCCTTGAACTTGTCTTCGAGCGGATTGGTGGGGGAAATAGCTACCTATGTGTCTGAGCTCACATCGTTACAATATTTGGATTTGTCAAACAATAGCTTGAGTGGACCGGTGCCTGGTTTTCTATCCAAATTGCAGTCCTTGAAAGTTTTAGACTTGAGGGACAATCCTCTCCTTGGTTCTATACCAAGTGAACTCATGGATAGATCGAAGAACGGATCCCTTTCAATAAGGGTTGGAGGAAACATGGATTTTTGTGCTTCATCTTCTTGTCAAAAGAAGAAAAAGAGTTACGTTATTACAATTGTAGCAATAGTTTCATCATTGTTTGTCCTCTTAGCTGCAGCAGCAGTATGGATAATATTATGGAGAAAACGAGCCCGAAAACAGCCTGTCATAAGACTCGGATCACTAGAGGAGAAAAAACAGCAGCTATCTTACTCTCAAATAAAGCGTATTACAAACAACTTTGCAAGAAAAATTGGAGAAGGAGGTTTTGCAAAAGTATTCCTCGGTTACTTGGATAATACTCAAGTCGCCGTGAAGGTCCTTAAGTCTTCGGTTCAAGGTTATAAAGAATTTGAAGCAGAGGTTAAACTTTTGTTGAGAATTCATCATCGAAACTTGACGAGCCTTATCGGATACTGCTGTGAAAAAACCAACCTGGTTCTAATTTATGAGTACATAAATAATGGCAACTTAAAAGAGCATCTATCAGGTGATAAAGTTGGTGTCCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATGCAGCGCAAGGGTTGGAGTATCTGCATCATGGTTGTAAGCCACCAATTGTTCACAGAGATGTGAAGTCTGCAAACATCCTTTTGAATGACAGATTCCAAGCTAAAATAGCTGATTTTGGTCTATCCAAGAGTTTTCCGACCGAAAGCCATACTCATTTGACAACTGTTGTTGCAGGGACCGATGGTTATCTTGACCCTGAGTATTACGCAACTGGCTGGTTGACTGAGAAAAGCGATGTATATAGTTTTGGAGTTCTTATATTGGAAGTAGTCACTTCCCGTCCAGTCCTCATGATTGATAGAGCTTCTTCACAGAAATATCATATAAGCCAATGGGTAATGCACTTGATGAAAACAGGTGATATAAGGAGCATCGTTGATCAGAGGGTGAGGGAAAACTTCGACTTGAATTCTGCTTGGAAGGCAGTGGAGATTGCTATGAAATGTTTGTCATTGAATTCCATTGATAGGCCAAACATGAAAGAGGTAGTTGCGGTGTTGAGTGAGTGTTTGGCGTTAGAGAAAGCTCGAAAACGAAGAAACGTTGATTCTAATATGGGAAAATCAAATGCAGTTAGTAGGAATTTCAGAGAGAGCGAAGTAACACCTTTTGCTAGATAG 2634 39.64 MIMEQLRYCLLQIFVALAISFLVSAQDQSGFISIDCGSSENSSYKDSVTDIKYISDVNFTQTGISKSISLDFNTTTLPQQFWYVRSFPEGERNCYTIKLAQGKGYKYLIRASFMYGNYDGQGTAPAFDLYMGVNKWDSVILHNESSIIIKEVIHVLPTSSIYICLVNTGFGSPFISALELRLLKNASYVTDFDLLALHRRLDVGSTTNRTIRYNDDFSDRIWMPYNFLNYKIISTSSTVDSGGSNSYNLPRIVMSTAITTYNASDPLEFHWVPEDPSTKYHIFLHFADLEKLQANQLREFNIYQNGNYLHGPFSPDYLQSTTLSSISPMSGDDIAFSLSKTNASNLPPILNALEIYIVLDTSQSRTDEQDITALMNIKSFYGLRKNWQGDPCQPKSFLWLGLNCSYDDQSPNRITSLNLSSSGLVGEIATYVSELTSLQYLDLSNNSLSGPVPGFLSKLQSLKVLDLRDNPLLGSIPSELMDRSKNGSLSIRVGGNMDFCASSSCQKKKKSYVITIVAIVSSLFVLLAAAAVWIILWRKRARKQPVIRLGSLEEKKQQLSYSQIKRITNNFARKIGEGGFAKVFLGYLDNTQVAVKVLKSSVQGYKEFEAEVKLLLRIHHRNLTSLIGYCCEKTNLVLIYEYINNGNLKEHLSGDKVGVLSWEERMQVAVNAAQGLEYLHHGCKPPIVHRDVKSANILLNDRFQAKIADFGLSKSFPTESHTHLTTVVAGTDGYLDPEYYATGWLTEKSDVYSFGVLILEVVTSRPVLMIDRASSQKYHISQWVMHLMKTGDIRSIVDQRVRENFDLNSAWKAVEIAMKCLSLNSIDRPNMKEVVAVLSECLALEKARKRRNVDSNMGKSNAVSRNFRESEVTPFAR 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29679714 29684995 + ClG42_11g0185400.10 Clacu11g1854 262731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1854 877 SMART serkin_6 569 842 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1854 877 Gene3D Transferase(Phosphotransferase) domain 1 643 866 - -
Clacu11g1854 877 SUPERFAMILY L domain-like 373 481 - -
Clacu11g1854 877 PANTHER OS07G0107800 PROTEIN-RELATED 24 847 - -
Clacu11g1854 877 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515(InterPro)
Clacu11g1854 877 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 643 851 - -
Clacu11g1854 877 Gene3D Ribonuclease Inhibitor 369 492 IPR032675 -
Clacu11g1854 877 PRINTS Leucine-rich repeat signature 459 472 - -
Clacu11g1854 877 PRINTS Leucine-rich repeat signature 438 451 - -
Clacu11g1854 877 Pfam Malectin-like domain 34 357 IPR024788 -
Clacu11g1854 877 ProSiteProfiles Protein kinase domain profile. 569 842 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1854 877 CDD STKc_IRAK 575 840 - -
Clacu11g1854 877 FunFam Leucine-rich repeat receptor-like kinase 369 502 - -
Clacu11g1854 877 Gene3D Phosphorylase Kinase; domain 1 550 642 - -
Clacu11g1854 877 SUPERFAMILY Protein kinase-like (PK-like) 554 838 IPR011009 -
Clacu11g1854 877 ProSitePatterns Protein kinases ATP-binding region signature. 575 596 IPR017441 GO:0005524(InterPro)
Clacu11g1854 877 Pfam Protein kinase domain 572 835 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1854 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0040 Clacu-Chr9:464065 Clacu11g1854 Clacu-Chr11:29679714 5.50E-186 dispersed
Clacu09g0041 Clacu-Chr9:469516 Clacu11g1854 Clacu-Chr11:29679714 1.90E-197 dispersed
Clacu09g0894 Clacu-Chr9:8314231 Clacu11g1854 Clacu-Chr11:29679714 6.50E-79 dispersed
Clacu10g2030 Clacu-Chr10:33772783 Clacu11g1854 Clacu-Chr11:29679714 2.60E-82 dispersed
Clacu11g1854 Clacu-Chr11:29679714 Clacu05g2733 Clacu-Chr5:34834044 7.40E-64 dispersed
Clacu11g1854 Clacu-Chr11:29679714 Clacu09g0032 Clacu-Chr9:391890 1.50E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73989 PF12819 Malectin_like 2.00E-110 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1854 - - - 0.0