Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1902 ATGGATTCCTTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCGGCAGAAGGAGGATCAATCACTTGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGAGTCTCGTGATTCATCATTTCTCCTCGTTCCTGACTCTACTTTGCCTCACCGAACCGCCATTTCCGCTTCTCCTTGCTGCTTGCCCACCAAGAAAAGAGTGTGGGCACTTCACCCTGATTTTGCCCCTGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCTGGAGGAAGAATCGATATCGAAAACAGAACTAGAGAGAGAGATAAAGGAGAAGGAAGAGGATAAGGAAAAAGAGGTTTCTGATGCTGAGATGGAGATACAAGACGAAGATGAAGACGAAGATGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGACGGGGATCCTTCAGATCCAATCGTGTTCTGCGACGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTTGTGAAGAGTGTACCTGAAGGAGATTGGTTTTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGATGGAGAAGAAGGCTTCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAACTTCTAGAGGTTGTGCTATTGATTGCTCAGAGCCTAAATGCAGTTTGGCTTTCCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTATCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGATTCTGCAGAAACCATACAGACTTGTGGAAAAAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1020 45.0 MDSFHGLPPLKRLRILQEQEQNRQKEDQSLDSCSLPAKKRKESRDSSFLLVPDSTLPHRTAISASPCCLPTKKRVWALHPDFAPESLDLNVEYKPPLEEESISKTELEREIKEKEEDKEKEVSDAEMEIQDEDEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLASSSSKMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLYVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30035611 30037398 - ClG42_11g0190200.10 Clacu11g1902 262779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1902 339 SMART PHD_3 262 317 IPR001965 -
Clacu11g1902 339 SMART PHD_3 141 190 IPR001965 -
Clacu11g1902 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 203 IPR013083 -
Clacu11g1902 339 Pfam PHD-zinc-finger like domain 207 304 - -
Clacu11g1902 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 319 IPR013083 -
Clacu11g1902 339 MobiDBLite consensus disorder prediction 19 48 - -
Clacu11g1902 339 Pfam PHD-finger 142 189 IPR019787 -
Clacu11g1902 339 Coils Coil 97 135 - -
Clacu11g1902 339 CDD PHD_BRPF_JADE_like 141 189 - -
Clacu11g1902 339 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
Clacu11g1902 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 205 317 IPR034732 -
Clacu11g1902 339 MobiDBLite consensus disorder prediction 98 125 - -
Clacu11g1902 339 SUPERFAMILY FYVE/PHD zinc finger 128 196 IPR011011 -
Clacu11g1902 339 PANTHER PHD FINGER PROTEINS 87 317 IPR050701 GO:0006357(PANTHER)
Clacu11g1902 339 MobiDBLite consensus disorder prediction 98 133 - -
Clacu11g1902 339 MobiDBLite consensus disorder prediction 19 47 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48692 PF13832 zf-HC5HC2H_2 3.00E-29 CL0390 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1902 K11380 - csv:101203744 594.349