Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1912 ATGGAAAAGGGCATTCTTAAAATTTGGTTTATTTATCCCCATGCAATGGAGATGTCTAACGACTCATCGATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGAATCACTTTGAGAGGGTCAGAAAGGCTGAGATTTGTTATGCTGTTTGTGTGCATTGCAACAAGAAGCTCAGTGGCTCAAGTAATAGCGGAACAACACATCTAAGAAATCACTTGATGCGATGTCTAAAAAGATCCAATTATGATGTTTCTCAACTACTTGTGGCCAAGAGATTAAAAAAGGACAATTCAAGTGGTCTTGCAAACATCAGCTTTGATGAAGGGCAGAGAAAAGAAGAGTTTAAATCAGCAATTGTGAAATATGATCCGGATCAGAGAAGGGATGAAGTGGTCACCATTGCAGGTAGTAAGTTTGATCAGGAGCGGAGTCAGAATGATCTTGCTCGTATGATCATATTGCATGGTTATCCATTGTCTATTGTTGAGCATGTGGGGTTTAAAGTTTTTGTCAAAAACGTTCAGCCGTTGTTTGAGGTATTACCCAATAGCACTGTTGAGCTTTCTTGTATGGAAATCTATCAGAAGGAGAAAGAGAAGATTTTTGAAACTATTAATAGATTGCAGGGTAGAATTAACCTATTTGCACTGACATTTGATGATTTTTCAACCAATGACGAGATAATCAGAAGAATTAAAGAACACATATCGAAGAAAAGGCCTCTTTTGAGTAATGGTAGACTATTTGACATATGCTCTGCTGCACATACCATGAATGCAATTGCTGAAGACGTGATAGAAGTGATGCGAGAGGTTAACCAAAAGATCCGAGGGGGTTTTAAATATATCAGAAGTTCACAGCTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAGTAGGGATCTCCAGTCAGAAGATATTGGTCCCTGACAGTCCTGGTCAATGGAATTCAACATATTTCATGCTCGAGACAGCCGTGGAATACAAGGGTGCATTTGAACTTCTTCAAAAGCATGATCCTCATTATGCATCAGCTCTTACTGCTTTAGAGTGGGAATGGACAACTAGTGTTGCTGACTATTTGAAACTTTTTGTCGAAATCGTGAACATCTTCTCTGGCAACAAATCTCCTACAGCAAATATATATTTTCCTGAGATATGCGATGTTCACATTCAATTAATCGAGTGGTGTAAGAGCTCGGATAATTTTCTCAACTCCCTTGCATCAAAAATTTATGGTAGTACGGCCTTGGATCGGATTAAGGAAGTTTCTGATGGTATCAAGGAACTTTATGATGCATATTCAATCTGCTTTACAATGGTTGATCAAGGTTCAGCTTTGCGTGGAAGCAGCTTACCTGGGACGAGCAACGACTCTAGGGACAGGCTAAAAGGATTTGACGAGTTCCTTCATGAGACTTCCCAAGAACTTGAAGATCCGAGGCCATTGTCTACTGCTTCGTACATACCACTTCTGCTCGGAACCAATTAA 1494 39.96 MEKGILKIWFIYPHAMEMSNDSSIKKPKRLTSVVWNHFERVRKAEICYAVCVHCNKKLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLVAKRLKKDNSSGLANISFDEGQRKEEFKSAIVKYDPDQRRDEVVTIAGSKFDQERSQNDLARMIILHGYPLSIVEHVGFKVFVKNVQPLFEVLPNSTVELSCMEIYQKEKEKIFETINRLQGRINLFALTFDDFSTNDEIIRRIKEHISKKRPLLSNGRLFDICSAAHTMNAIAEDVIEVMREVNQKIRGGFKYIRSSQLTQGRFNEMAHQVGISSQKILVPDSPGQWNSTYFMLETAVEYKGAFELLQKHDPHYASALTALEWEWTTSVADYLKLFVEIVNIFSGNKSPTANIYFPEICDVHIQLIEWCKSSDNFLNSLASKIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALRGSSLPGTSNDSRDRLKGFDEFLHETSQELEDPRPLSTASYIPLLLGTN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30117058 30119585 - ClG42_11g0191200.10 Clacu11g1912 262789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1912 497 SUPERFAMILY Ribonuclease H-like 198 471 IPR012337 -
Clacu11g1912 497 PANTHER BED FINGER-RELATED 163 441 IPR045259 -
Clacu11g1912 497 SMART bed5 29 79 - -
Clacu11g1912 497 Coils Coil 191 211 - -
Clacu11g1912 497 Pfam BED zinc finger 32 76 IPR003656 GO:0003677(InterPro)
Clacu11g1912 497 SUPERFAMILY beta-beta-alpha zinc fingers 32 79 IPR036236 -
Clacu11g1912 497 ProSiteProfiles Zinc finger BED-type profile. 29 84 IPR003656 GO:0003677(InterPro)
Clacu11g1912 497 Pfam hAT-like transposase, RNase-H fold 373 412 IPR025525 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1912 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1117 Clacu-Chr1:16489536 Clacu11g1912 Clacu-Chr11:30117058 3.90E-13 dispersed
Clacu09g2248 Clacu-Chr9:37286940 Clacu11g1912 Clacu-Chr11:30117058 2.40E-104 dispersed
Clacu11g1912 Clacu-Chr11:30117058 Clacu06g1228 Clacu-Chr6:23058492 5.70E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g29 . . . . . . . . . . . . . Car09g00597 . Cpe06g00527 . . . . . . . . Cla11g01688 Cam11g1752 Cec11g1776 Cco11g1777 Clacu11g1912 . Cre11g2133 . . . . Lsi04g01979 . . . . . . . . . . . . . Cmo09g00658 . . . . . . . . . . . . . . . . . . . . . . Chy07g00984 Cme07g01359
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000265 0 10 0 0 0 4 3 4 4 5 4 5 8 6 6 7 4 8 7 5 5 5 5 3 4 5 4 11 12 3 147