Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1916 ATGTTCATGGCTCGATTCCTCGCCGTCTTTCTTTTCTTTTCTCTCGTTTCCGCCATCCCTCAGCTGCCGGCCGACGAAGTTGAAGCATTAAAGGAGATCGGAAAGGCATTGGGGAAGGCGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGGGTAGCGGTTGGATAACCAATTCTTTCGAAACGGGGTTTGTTAATAATCTCACATGCAACTGCACCTTCCAGAATAACTCCGTTTGTCACGTCACTAAAATCCGTCTAAGGTCACAGAACCTTCCAGGCATTCTGCCGCCACAACTAGTGAGGCTGCCTTACTTGGAAGAACTTGATCTTGCCCGCAACTATCTCAGCGGTCCAATTCCTCCAGAATGGGGTGCTTCAAAGCTTGTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTGATCCTTGAAGTTAATCAGTTGTCTGGAAGTCTGCCTCCAGAACTTGGAAAGCTGACCAGGTTATCAAGATTACTTCTTTCCTCAAACAACTTTTCCGGGGAGCTCCCATCTTCACTGGGAGCTATAACCACATTGACGGACCTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCCAAGTATATTCAGAATTGGCCGAATCTTGGAAAACTAGGTATTCAGGCAAGCGGGCTGAGTGGACCAATTCCTTCTGAAATTGGACTTCTGACAAAATTATTGGATCTGAGAATCAGCGACTTGAATGGAGGTTCATCGTCCTTTCCACCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGCTGCAATATAGTTGGGATGCTGCCTGACAATCTTGATGGGTTGGAAAACGTGCAAACCTTAGACTTTAGCTTCAACAAAATTAGTGGACCAATACCTGCCGGCTTTGAAGCTTTGAAGAAAGTGGATAGAATATATTTAACTGGAAACTTGCTAACTGGAGCTGTGCCTCTTTGGATGCTGCAGGAGGGAGAAAACATTGATCTCTCTTATAACACATTTACTGAGACAGATTTTCAGGCCTTGGGTTGTGAAGCACGAAGTTTAAACCTGTTCGCGAGCTCTTCACAGGACAATACTTCTGGAATAGTTTCATGTTTAGCGGGCACATGTGACAAAACTTGGTACTCTCTCCATATCAATTGCGGTGGGAAGGAAGATTTAATAAACGGAACAATCAGGTTTGATGGAGACACAAACACGGGGAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGATGATGATCGCTCAACAGACGACTTCATTGCATTAAGTCCACCTGATCTCCCTATGAAAAATCTTGGATTGTACACCAATGCACGGATTTCTCCCATCTCTCTTACTTATTATGCGTTTTGCATGGGTAATGGAAACTACACAGTAAGCCTACATTTTGCTGAGATAGAGTTTAGTAATGACAAATCATACAAAAGCCTTGGCAGACGCATATTTGATGTCTACGTTCAGAGAGAGCTGGTGTTGAAGGATTTTAATATTGCAGAGGCAGCAGGTGGTGTTGGCAAACCTCTTGTAGAGAAATTCACTGTTTCTGTGACTGATGGTACTATAGAGATCCGTCTATTTTGGGTGGGGAAGGGGACAAATGCAGTCCCTGTAAGAGGAATTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGATCCACCATCAGAAGGTGGAAATGCCATATCCGCTGGAGTGGTTGGAATTGTGGCTGCTGTGGTCTTGGTTATCATCTTGCTTCTAGGGGTCTTGTGGTGGAGAGGCAGCCGAAGAACGAAAAGCACACTTGAACAAGAGTTGAAGGATCTTGATCTCGGAACAGGATCATTTTCATTAAGACAAATCAAAGCTTCCACTAACAATTTTGATGTTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCGTTCTTGCTGATGGCAGTGTAATTGCAGTGAAGCAACTTTCTTCAAGGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATATACGAGTATCTGGAAAATAACAGTCTTGCTCGTGCCTTATTCGGACCTGAAGAATACCAACTGAAATTGGGTTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATACCTTCACGACGAGTCAAGACTAAAGATCGTTCACCGTGACATCAAAGCTACCAATGTTCTTCTCGACAAAAATCTAAACCCGAAGATTTCCGACTTTGGTTTGGCTAGGCTAGATGATGAAGGAAATACACACATCAGCACACGGGTTGCCGGAACCTATGGATATATGGCACCAGAATACGCCATGCGAGGGTACTTAACTGACAAAGCAGACGTTTATAGTTTTGGTGTGGTAGCATTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGATGATTGCTTATATCTTCTTGATTATGCTAACGTTTTAAAAGAGAGAGGGAATTTACTAGACCTTGTCGATCCACGGTTAGGCTCTGAATTCAACAAGACAGAGGCAATGACGATGATCACTATCGCCCTTCAATGCACGAACATCAGTGCTGCAGACAGACCCTCCATGTCAACAGTAGTAGGCATGCTGGAAGGGAAGATTGGTGTAGAGGAGTTGGTTTCAGATCCAAATATCTCAAAGCAAGATGTGAATGCTATGTGGAGCCACATGTACCACCAGAAAGTGAAAACAATGGGCGAGAGCGAGATACAAAGTATGTTGACATGTGAGAGCGAGAGCGAGACCCAAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAATTACTGATAGTGATTGCCTTCCCATCATGGCTGATGCTAGATACTTGGAGAATAGGATTTAG 3042 43.46 MFMARFLAVFLFFSLVSAIPQLPADEVEALKEIGKALGKADWNFTANPCGGLGSGWITNSFETGFVNNLTCNCTFQNNSVCHVTKIRLRSQNLPGILPPQLVRLPYLEELDLARNYLSGPIPPEWGASKLVNISLLGNRLTGPIPKEIGNISTLVELILEVNQLSGSLPPELGKLTRLSRLLLSSNNFSGELPSSLGAITTLTDLRISDNHFTGSIPKYIQNWPNLGKLGIQASGLSGPIPSEIGLLTKLLDLRISDLNGGSSSFPPLNSLTKLKTLILRSCNIVGMLPDNLDGLENVQTLDFSFNKISGPIPAGFEALKKVDRIYLTGNLLTGAVPLWMLQEGENIDLSYNTFTETDFQALGCEARSLNLFASSSQDNTSGIVSCLAGTCDKTWYSLHINCGGKEDLINGTIRFDGDTNTGKSSLFFQGGANWGFSNTGSFMDDDRSTDDFIALSPPDLPMKNLGLYTNARISPISLTYYAFCMGNGNYTVSLHFAEIEFSNDKSYKSLGRRIFDVYVQRELVLKDFNIAEAAGGVGKPLVEKFTVSVTDGTIEIRLFWVGKGTNAVPVRGIYGPLISAISVDPDFDPPSEGGNAISAGVVGIVAAVVLVIILLLGVLWWRGSRRTKSTLEQELKDLDLGTGSFSLRQIKASTNNFDVANKIGEGGFGPVYKGVLADGSVIAVKQLSSRSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLGWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNPKISDFGLARLDDEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKDDCLYLLDYANVLKERGNLLDLVDPRLGSEFNKTEAMTMITIALQCTNISAADRPSMSTVVGMLEGKIGVEELVSDPNISKQDVNAMWSHMYHQKVKTMGESEIQSMLTCESESETQSMLMDGPWTDSSITDSDCLPIMADARYLENRI 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30145850 30159770 - ClG42_11g0191600.10 Clacu11g1916 262793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1916 1013 SUPERFAMILY Protein kinase-like (PK-like) 641 941 IPR011009 -
Clacu11g1916 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 586 - -
Clacu11g1916 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Clacu11g1916 1013 Gene3D Ribonuclease Inhibitor 262 371 IPR032675 -
Clacu11g1916 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 943 IPR051824 -
Clacu11g1916 1013 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515(InterPro)
Clacu11g1916 1013 Gene3D - 395 585 - -
Clacu11g1916 1013 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1916 1013 Pfam Protein tyrosine and serine/threonine kinase 659 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1916 1013 Gene3D Phosphorylase Kinase; domain 1 621 732 - -
Clacu11g1916 1013 Gene3D Transferase(Phosphotransferase) domain 1 733 940 - -
Clacu11g1916 1013 SUPERFAMILY L domain-like 74 355 - -
Clacu11g1916 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Clacu11g1916 1013 Gene3D Ribonuclease Inhibitor 193 261 IPR032675 -
Clacu11g1916 1013 Gene3D Ribonuclease Inhibitor 39 192 IPR032675 -
Clacu11g1916 1013 Pfam Malectin domain 397 581 IPR021720 -
Clacu11g1916 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1916 1013 SMART serkin_6 657 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1916 1013 Pfam Leucine Rich Repeat 178 197 IPR001611 GO:0005515(InterPro)
Clacu11g1916 1013 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Clacu11g1916 1013 Pfam Leucine Rich Repeat 202 223 IPR001611 GO:0005515(InterPro)
Clacu11g1916 1013 CDD STKc_IRAK 663 930 - -
Clacu11g1916 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1916 Clacu-Chr11:30145850 Clacu11g1918 Clacu-Chr11:30185620 4.20E-212 dispersed
Clacu11g1915 Clacu-Chr11:30133516 Clacu11g1916 Clacu-Chr11:30145850 7.40E-194 tandem
Clacu11g1916 Clacu-Chr11:30145850 Clacu11g1917 Clacu-Chr11:30161371 0.00E+00 tandem
Clacu03g0738 Clacu-Chr3:8195608 Clacu11g1916 Clacu-Chr11:30145850 3.60E-203 transposed
Clacu07g1001 Clacu-Chr7:24440289 Clacu11g1916 Clacu-Chr11:30145850 4.10E-215 transposed
Clacu09g2242 Clacu-Chr9:37215327 Clacu11g1916 Clacu-Chr11:30145850 3.80E-205 transposed
Clacu09g2282 Clacu-Chr9:37566657 Clacu11g1916 Clacu-Chr11:30145850 8.30E-139 transposed
Clacu11g1916 Clacu-Chr11:30145850 Clacu07g0274 Clacu-Chr7:3102491 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73992 PF07714 PK_Tyr_Ser-Thr 8.30E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1916 - - - 0.0