Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1917 ATGCTGTTGGCTCGATTACTCGCCGTCGTTTTTTTCTCATCTCTCTGCTTCGTAACCCTCACTTCCGGAGCCGCTCTGTTGCCGGCCGACGAAGTGGAAGCGTTGAAGGAGATCGGAAGGACATTGGGGAAGACGGGGTGGGATTTCACCGCCGATCCATGCGGCGGCGTTAGTAGCGGTTGGGTATCGAATTCCAAACAATTCGATAATAATTTTGCTAATAATGTCACGTGCGACTGCACGTTCCTAAATAATACCGTCTGTCACGTCACCATCATTGTTCTGAAGGCGCAGAGCCTTCAAGGTACTCTGCCTCCGCAACTAGTGAGGTTGCCTTTCCTGCAGGAACTTGATCTCACTCGCAACTATCTCAGCGGCCCGATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCACCACTCTTACAGACTTGGTTTTGGAAATGAATCATTTTTCTGGAAGTATACCTCCAGAACTTGGAAATTTGACCAACTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCACCTTCCTTGGCAAGGATAACCTCATTGACGGACTTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGCGACTTGAATGGAGGTTCATCGCCCTTTCCGCCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGTTGCAATATAACTGGGATGCTACCCGACAATCTTGGTGGTTTGACATCATTGAAAATCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGATAGCTTTGAAGCATTAAAAAAAGTGGATAGCATATATCTAACTGGAAACTTGCTAAATGGATCAGTGCCCATTTGGATGCTAGATCAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTCAGAGAAACTCTCAGAACACTGGTTGTCAATCACGAAATTTAAACCTATTTGCAAGCTCTTCACAGGACAATAATTCTGGAGCAGTCTCATGTTTAGGCACTTGTCAAAAAACTTGGTACTCTGTCCATATAAACTGCGGAGGGAATGAAGAATTAATTAATGGAACAACCAAATTTGATGCTGACGCAAACACTGGAAGATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGTAATACTGGCAATTTTATGGACGATGATCGCTCAACAGACGATTTTATTGCATTAAACTCATCTACTCTCTCAATACCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCTTGGGTACTGGAAACTACACACTAAGCCTTCATTTTGCTGAGATAATGTTTACTAATGACAAAACATACAGTAGCCTTGGCAGACGCTTATTTGATGTTTACGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTATTGGCAAACCTTTTGTAAAGAAATTCAAAGTTTCAGTGACTAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGAAAGGGGTCAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCCGCCATTTCTGTTGATCCTGACTTTACGCCACCATCAGAAGGTGGAAATGCCATATCTGCCGGTGCAGTGGTTGGAATTGTGGTTGCTGTGGTCTTTGTTATCATCTTGGTTCTTGGACTGTTGTGGTGGAGAGGCTGCCTAAGAAAGACAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCTGCTACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTATTCTTGCAGATGGCACCGTAATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTAATATATGAGTATTTGGAAAACAATAGCCTTGCTCGGGCCTTATTCGGACCTGAAGAATGCCAACTGAAATTGGATTGGCCAACTAGGCAAAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATACCTTCACGAGGAGTCAAGACTTAAGATCGTTCACCGAGATATCAAAGCTACCAATGTTCTACTCGATAAAAATCTCAACCCCAAGATTTCCGACTTCGGTTTGGCAAAGCTGGATGAAGAAGAAAATACACATATCAGCACCCGGGTTGCTGGAACCTATGGGTATATGGCACCAGAATATGCCATGCGAGGCTACTTAACTGACAAGGCAGATGTGTACAGCTTTGGTATTGTGGGGTTGGAGATAGTCAGTGGTCGAAGCAACACAAGTTTCCGGACCAAGGACGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAAAGACCGTTTATTAGAGCTTGTCGATCCACGGTTAGGCTCTGATTTCAACAAGAGAGAGGCAATGACGATGATCAACATTGCTCTCCAATGTACAAACGTCGTTGCTGGTGACAGGCCTGCCATGTCATCAGTGGTGAGCATGCTGGAGGGGAAGGTTGTTGTGAAGGAGGTGGTTTCAGATCCCAGTGTCTCAAAACAAGATGTGAATGCAATGTGGAGCCAGATTTATCGCCAGAAAGGGGAAACAACGAGTGTAAGCCAGACGCAAAGTTTGACTATGGATGGACCATGGAGTGGTTCTTCAACAACTGCCAGTGATCTCTATCCCATCAACATGGATTCTAAATACTTGGAGAATAGAAACTAG 2955 42.67 MLLARLLAVVFFSSLCFVTLTSGAALLPADEVEALKEIGRTLGKTGWDFTADPCGGVSSGWVSNSKQFDNNFANNVTCDCTFLNNTVCHVTIIVLKAQSLQGTLPPQLVRLPFLQELDLTRNYLSGPIPPEWGSTKLLKISLLGNRLTGPIPKEIGNITTLTDLVLEMNHFSGSIPPELGNLTNLSRLLLTSNNFSGELPPSLARITSLTDLAIQASGLSGPIPSEIGLLTKLTDVRISDLNGGSSPFPPLNSLTKLKTLILRSCNITGMLPDNLGGLTSLKILDFSFNKITGPIPDSFEALKKVDSIYLTGNLLNGSVPIWMLDQGESIDLSYNKFTQRNSQNTGCQSRNLNLFASSSQDNNSGAVSCLGTCQKTWYSVHINCGGNEELINGTTKFDADANTGRSSLFFQGGANWGFSNTGNFMDDDRSTDDFIALNSSTLSIPNPELYMRARISPISLTYYAYCLGTGNYTLSLHFAEIMFTNDKTYSSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPFVKKFKVSVTNGTIEIRLFWAGKGSNAIPVRGVYGPLISAISVDPDFTPPSEGGNAISAGAVVGIVVAVVFVIILVLGLLWWRGCLRKTSTLEQELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGILADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPEECQLKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVGLEIVSGRSNTSFRTKDDCFYLLDHANTLKEKDRLLELVDPRLGSDFNKREAMTMINIALQCTNVVAGDRPAMSSVVSMLEGKVVVKEVVSDPSVSKQDVNAMWSQIYRQKGETTSVSQTQSLTMDGPWSGSSTTASDLYPINMDSKYLENRN 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30161371 30173120 - ClG42_11g0191700.10 Clacu11g1917 262794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1917 984 FunFam Putative LRR receptor-like serine/threonine-protein kinase 716 923 - -
Clacu11g1917 984 Pfam Leucine Rich Repeat 184 204 IPR001611 GO:0005515(InterPro)
Clacu11g1917 984 Pfam Leucine Rich Repeat 114 133 IPR001611 GO:0005515(InterPro)
Clacu11g1917 984 Pfam Leucine Rich Repeat 161 182 IPR001611 GO:0005515(InterPro)
Clacu11g1917 984 MobiDBLite consensus disorder prediction 946 967 - -
Clacu11g1917 984 SUPERFAMILY Protein kinase-like (PK-like) 624 935 IPR011009 -
Clacu11g1917 984 Pfam Protein tyrosine and serine/threonine kinase 643 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1917 984 SUPERFAMILY L domain-like 77 338 - -
Clacu11g1917 984 Pfam Leucine rich repeat 256 315 IPR001611 GO:0005515(InterPro)
Clacu11g1917 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1917 984 Gene3D Ribonuclease Inhibitor 241 356 IPR032675 -
Clacu11g1917 984 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 609 715 - -
Clacu11g1917 984 Pfam Malectin domain 379 563 IPR021720 -
Clacu11g1917 984 SMART serkin_6 640 911 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1917 984 Gene3D Phosphorylase Kinase; domain 1 607 715 - -
Clacu11g1917 984 CDD STKc_IRAK 646 911 - -
Clacu11g1917 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 377 568 - -
Clacu11g1917 984 Gene3D - 376 567 - -
Clacu11g1917 984 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 199 - -
Clacu11g1917 984 Gene3D Ribonuclease Inhibitor 28 240 IPR032675 -
Clacu11g1917 984 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 927 IPR051824 -
Clacu11g1917 984 ProSiteProfiles Protein kinase domain profile. 640 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1917 984 Gene3D Transferase(Phosphotransferase) domain 1 716 929 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0738 Clacu-Chr3:8195608 Clacu11g1917 Clacu-Chr11:30161371 9.80E-201 dispersed
Clacu09g2242 Clacu-Chr9:37215327 Clacu11g1917 Clacu-Chr11:30161371 4.40E-209 dispersed
Clacu11g1915 Clacu-Chr11:30133516 Clacu11g1917 Clacu-Chr11:30161371 9.50E-16 dispersed
Clacu11g1917 Clacu-Chr11:30161371 Clacu11g1919 Clacu-Chr11:30197279 8.60E-202 dispersed
Clacu11g1916 Clacu-Chr11:30145850 Clacu11g1917 Clacu-Chr11:30161371 0.00E+00 tandem
Clacu11g1917 Clacu-Chr11:30161371 Clacu11g1918 Clacu-Chr11:30185620 1.90E-201 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73993 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1917 - - - 0.0