Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1918 ATGGTCGGAACTTGGGACATGGATTTGGCTGTTCTTGTTTATGGCTTCCTGCTTTTGAACTGCTTCTTGGAATTTGGATCCCATGCCCAACCTCTGCCTGATCAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAATGTTCACCAAAATTCTTGCATTAATGGTGATGGATTTTTCAATAGACCAATCCTTGGTACAGATATTATCAGAGAGGTTAATTGCACTTGCACCACTGTTTGCAGTGTCACTACCATCCGGCTAAAGGGTTTGAATCTAACTGGAACTCTGCCAGCAGCATTTGGAAATCTAACAAAGCTGCAAACAATAGATCTTACTCGCAATTTAATTTCTGGATCGATCCCTAGAGAGTTCGCACAGATTCCTCTTGTTGATTTGTCCATGTTGGGAAATCGTCTCAGTGGTGAAATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATTTGGTGTTGGAAGACAATCTCCTTGGAGGGAATCTTCCCGAAAGCCTCGGGCGACTGAGCCGCTTGCGAAGATTACTTCTTTCTGCAAATAATTTCAATGGAACAATTCCAGCATCGTATGGAAACTTGAAGAACTTGACTGATTTTCGGATAGATGGAAATGATGTATCAGGAAGACTTCCTGAATTTATTGGCAATTGGACCAAACTAGAGAGACTGGATATTCAAGGAACTTCTATGGAGACACCAATTCCTAGTGGAATATCTGACTTGAAAAACTTAACCCAATTGAGGATAACTGATTTGAAGGGACTGCCAACAAGTTTTCCTAATTTGACTCAATTGACATCTTTAGAAGAACTGATCCTAAGAAATTGCTTAATCCAGGATCAGATTCCTGGGTATATTGGATTGTTTAGTAATTTGAAAACTTTAGATCTAAGCTTCAATGAATTGAGTGGTCCAATTCCAAATACATTTCAGAATCTAGACAGAGTTACTCGGTTCATGTTTTTGACAAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTGAAAGGAGCATAGATTTATCTTACAACAATTTTACTGGGTCCCCTGTTTCAAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATAACACTGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGCCCAAGAGAAACGCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGGATGGAGGTTGATGGTAATGAATATGAAGAGGATGTAACTCCAGGTGGCAAATCCAATTTCATTTCTTTCTCTGATAGATGGGCTTATAGCAGTACTGGTGTTTTCCTGGGAGATGAGAATGCTAATTACAGAGAAACAAGTAGCAATGCATCTATTTCGAGCATCTACCGAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGTTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTTCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAATTTGGTTCAAAAAGATTTTAACATAATGGAGAAAGCTGGTGGTGTTGGGAAGAGCTTTATTCTAGAAGAGCCTAATATTTTGGTCAATGGAAGTACTCTTGAGATACACTTATATTGGGCTGGTAAAGGAACTACTGCCATTCCAGACAGAGGGGTGTATGGACCTTTGATATCTGGGATCACAGTCACACCAAACTTTGATGTGGAGACTGGAGGGCTATCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTAGTTTCGTGTTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAAGGTTATTTGGGTGGAAAGGACACTGAAGACAGTGAATTGAAGGCCCTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATCAAAACAGCCACCAACAATTTCGACCCGACCTATAAAATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGTGTATTGTCCGATGGTACTTCGATCGCGGTAAAGCAACTATCCTCTAAATCAAGACAAGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTGTTTATGAGTATCTAGAGAATAACAGTCTTGCCCGTGCTCTTTTTGGCGCGGAGGAGCACCGACTACACTTGGATTGGCCGATAAGAATGAAGATATGCTTGGGACTAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCATAGAGATATAAAAGCTACCAATGTGTTACTTGATAAAAACCTGAATGCCAAGATTTCTGACTTTGGATTGGCTAGGCTTGATGAAGAAGAGAACACCCATATCAGCACAAGAATTGCTGGCACAATTGGTTACATGGCTCCTGAGTATGCAATGCGAGGCTACTTAACCGATAAAGCAGATGTTTATAGCTTCGGAGTTGTGGCTTTAGAGATTGTTAGTGGAAAAAGTAACACAAACTATAGGCCAAAAGAGGAATTTGTTTATCTTCTCGACTGGGCTTATGTTCTACAAGAGCAAGGAAACCTTCTCGAACTCGTTGATCCGAGTCTCGGCTCACATTACTCAAAAGAAGAGGTGATGAGGATGATTCATATAGCTCTGTTATGCACAAATCCATCTCCAACTCTTAGGCCATCTATGTCTTCAGTGGTTAGCATGCTTGAAGGAAAAATTGCGGTCCAAGCGCCGATCATAAAGCGCGGTGCAGTCGATCAAGATGCAAGGTTCAAAGCCTTTGAAAGACTGTCACAAGATAGCATAACAAGCATTTCAACATCATCACAAGGCATTCCAATGCAAAAAAGCATGTTGATTGATGGGCCCTGGATTGATTCCACTACTTCTTCTCATAACAAGGATGAAACTCAAGATTATTCTTCAACCACAAATCTCCTTTAG 3027 40.7 MVGTWDMDLAVLVYGFLLLNCFLEFGSHAQPLPDQEVRALQAISAELRNLNWNVHQNSCINGDGFFNRPILGTDIIREVNCTCTTVCSVTTIRLKGLNLTGTLPAAFGNLTKLQTIDLTRNLISGSIPREFAQIPLVDLSMLGNRLSGEIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLRRLLLSANNFNGTIPASYGNLKNLTDFRIDGNDVSGRLPEFIGNWTKLERLDIQGTSMETPIPSGISDLKNLTQLRITDLKGLPTSFPNLTQLTSLEELILRNCLIQDQIPGYIGLFSNLKTLDLSFNELSGPIPNTFQNLDRVTRFMFLTNNSLSGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNNTVAWCLRKDLPCPRETRFHSLFINCGGQRMEVDGNEYEEDVTPGGKSNFISFSDRWAYSSTGVFLGDENANYRETSSNASISSIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTSDQTFSSLGERIFDISIQGNLVQKDFNIMEKAGGVGKSFILEEPNILVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISGITVTPNFDVETGGLSAGAIAGIVVGSFVFVVLVLAVLRWKGYLGGKDTEDSELKALDLQTGYFSLRQIKTATNNFDPTYKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGAEEHRLHLDWPIRMKICLGLAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSHYSKEEVMRMIHIALLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIIKRGAVDQDARFKAFERLSQDSITSISTSSQGIPMQKSMLIDGPWIDSTTSSHNKDETQDYSSTTNLL 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30185620 30194574 + ClG42_11g0191800.10 Clacu11g1918 262795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1918 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1918 1008 Gene3D Ribonuclease Inhibitor 73 263 IPR032675 -
Clacu11g1918 1008 Gene3D Phosphorylase Kinase; domain 1 628 734 - -
Clacu11g1918 1008 Pfam Protein tyrosine and serine/threonine kinase 664 929 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1918 1008 MobiDBLite consensus disorder prediction 984 1008 - -
Clacu11g1918 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Clacu11g1918 1008 CDD STKc_IRAK 665 932 - -
Clacu11g1918 1008 Pfam Malectin domain 407 585 IPR021720 -
Clacu11g1918 1008 SMART serkin_6 659 930 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1918 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 590 - -
Clacu11g1918 1008 ProSiteProfiles Protein kinase domain profile. 659 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1918 1008 SUPERFAMILY L domain-like 80 363 - -
Clacu11g1918 1008 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Clacu11g1918 1008 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Clacu11g1918 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 628 734 - -
Clacu11g1918 1008 Gene3D Transferase(Phosphotransferase) domain 1 735 943 - -
Clacu11g1918 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 955 IPR051824 -
Clacu11g1918 1008 SUPERFAMILY Protein kinase-like (PK-like) 643 936 IPR011009 -
Clacu11g1918 1008 Gene3D - 405 590 - -
Clacu11g1918 1008 Gene3D Ribonuclease Inhibitor 264 381 IPR032675 -
Clacu11g1918 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 942 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1001 Clacu-Chr7:24440289 Clacu11g1918 Clacu-Chr11:30185620 0.00E+00 dispersed
Clacu09g2282 Clacu-Chr9:37566657 Clacu11g1918 Clacu-Chr11:30185620 6.80E-149 dispersed
Clacu10g2164 Clacu-Chr10:34798910 Clacu11g1918 Clacu-Chr11:30185620 1.60E-92 dispersed
Clacu11g1916 Clacu-Chr11:30145850 Clacu11g1918 Clacu-Chr11:30185620 4.20E-212 dispersed
Clacu11g1918 Clacu-Chr11:30185620 Clacu11g0384 Clacu-Chr11:3501975 1.50E-71 dispersed
Clacu11g1917 Clacu-Chr11:30161371 Clacu11g1918 Clacu-Chr11:30185620 1.90E-201 tandem
Clacu11g1918 Clacu-Chr11:30185620 Clacu11g1919 Clacu-Chr11:30197279 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73994 PF07714 PK_Tyr_Ser-Thr 3.10E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1918 - - - 0.0