Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1919 ATGGATTTTTGTATTTGGAGCTTGAAGAGTGTTTGTGTATTGCTGCTTTTCAGCTGCTTCTTCCACTTTAGATCTCATGCCCAACCTTTACCTCAACAAGAAGTGAGTGCCCTCGAAGAAATATCTACAAAGTTAAAGAACTTAAATTGGAAAGTGCATCAAAATTCTTGCATTAATGGCGATGGCTTTTCCAATCTGTTTATCAGTTCCAGTAATTTGAGAGAGGTCAATTGCACTTGTACCACTATTTGCCACGTCACTAGCATACGGCTAAAAGGTCTTAATCTAGTTGGAGTTCTGCCCGTAGAATTTGCAAATCTGACTCAACTCCGGGATTTAGATCTCACTTACAATTTTATTTCTGGATCAATCCCAAGACAATTTGGTCGCATTCCTCTCCTTACGTTTTCCATAATTGGAAACCGACTCAGCGGTGAGATTCCTCCTGAAATTGGTGATATTGCTTCACTTGAGGAACTGATCTTGGAAGACAATCAGATTGGAGGAAATCTTTCTGAAAATCTTGGAAAACTAACCAGCTTACGTCGATTACTTGTTTCTTCAAATAATATTACAGGGTCGATTCCAGAATCATTTCGAAACTTGAGGAACTTGACTGAATTTCGGGTGGATGGAACTAACATATCAGGAAAGATACCTCAATATATTGGCAACTGGACCAAACTTCTTAAATTGTATGTTCAAGGAACTTCAATGGAGAATCCTATTCCTCCTTCCATATCCGACTTGAAAAACTTAACCGAATTGGTCTTGAGAAATTGTTTAATCGAGGGTCGTATTCCTGAATATATTGGATCGTTTAATGAATTAAGAACTTTAGATCTAAGCTTCAACAGATTAAGTGGTCCAATTCCAGAAACATTTCAAAATCTATTCGTCCAAAAAACTGCCTTCATGTTTCTGAATAACAACTCCTTAATCGGGCAAGTTCCGAGTTGGATTATTGCCCAAGGTAGCAGCAGCAATAGAAACATAGATTTATCTTACAACAATTTTACTGGAATAAGCGATTTTAGTTGTACACAGTCTAATAATATTAACTTGGTTTCAAGTTCTACCGCAAAGAATAAAAGTGATGGTTGGTGCCAAATGAAGGATCTCCCTTGCTCTACAAAACCTCAATTTGATTCATTGTTCATTAATTGTGGAGGAGGAAGTATGGAATTTAATGGTAGTAGATATGAAGGGGATGATACTCAAGGTGGGAAAGCCAATTTCTTTTTCTCAACACAAAGATGGGGTTACACTACTACTGGTGTTTCATTGCTAAATGATCACCTTCCTTTCAAACTATCATCTACCAATTCCTCTGTTTCTTCTTCTTCTTCACCAACCCTCTATTCCACTGCCAGACTTTCCCCTCTTTCTCTCAATTACTATGGCCTTTGCCTCATCAGTGGAAGCTACAATGTCAAGCTTCACTTTGCTGAAATTTTGTTTACTCCTGACCAAACTTATACCAGCCTTGGAAGACGTATTTTCGATATCTCCATTCAAGGAAAGTTGATTAAGAAGGATTTTAACATAGCGGAGGAAGCTGGAGGTGTTGGTAAAGAGTTTATTTTAGAAGTGCCTAATGTTATGGTCAATAATGGAAGTAGTACTCTTGAGATCTCCTTGTATTGGGCTGGTAAAGGAACAATTTACATTCCATACTTAGGGGTGCATGGACCTCTGATATCTGCAATCACCGTCACACCAAACTTCAAAGTGGAAACTAATGTGGAAACTAGAGGGCTACCGGCTGGAGCTATTGCTGGCATTGTTGTTGGTATTTTCGTCTTTGTCGTCCTAGTATTTGTTGTTCTTCGATGGGAGGGTTATTTAGGCGGAAAGGAAACCGAAGACGATGAACTTCGAGACTTGAAATTACAAACAGGTTATTTCAGTTTAAGACAAATCGGGGCAGCCACCAACAGCTTTGACTCTGCTAATAAGATTGGGGAGGGAGGCTTTGGTCCTGTCTACAAGGGAGTACTATCAGATGGCACTTCAATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAATTCATCACAGAAATTGGGATGATTTCTGCGTTACAACATCCAAATCTTGTTAAGCTTTATGGTTGCTGTATTGAAGGAAACCAATTGTTGCTTATTTATGAGTATCTACAGAACAATAATCTTGCTCGAGCACTTTTTAGCCCTGAGAAACATTCCTTGCATTTGGATTGGCCAATAAGAATGAAGATATGTTTGGGAATAGCAAAAGGGTTGGCTTATCTTCATGAAGAATCAAGATTGAAAATTGTTCATAGAGATATAAAAGCTACTAATGTTCTACTTGATGGAAACTTGAATGCCAAGATCTCTGATTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACTCATATTAGCACAAGAATTGCTGGCACAATTGGTTATATGGCTCCTGAATACGCAATGAGGGGTTATTTGACTGATAAGGCTGACGTTTATAGCTTTGGAGTGGTGGCATTAGAGATTGTTAGTGGTAAAAGTAATACGAATTACAGACCGAAAGAGGAATTTGTTTATCTTCTTGATTGGGCTTGTGTTCTACAAGAGGAAGGGAACTTACTTGAACTTGTTGATCCAAATCTTGGCTCACATTACTCAAAAGAGGAGGTCATGAGGATGCTTCATATAGCTCTCTTGTGCACAAACTTGTCTCCAAGTCTCAGACCATCCATGTCTTCTGTGGTTAGCATGCTTGAAGGTAAAATCACAGTCGAAGTATCGAACATCAAGCGCAACACGACCAGTCGAGAGGCAAGGTTCAAAGCATTTGATCACAAACTGTCACCAGATAGCCTAACAAGCATTTCGACCTCGTCGCAATTGCAAGGCATTGAGACGCAAAAAAGCATGTTAATGGATGGGTCATGGATTGACTCATCATCTACTTTTACTCAAGACAGAGACAATGCTCGAGAGCATTCTTCAACAAGAAGTCTCCTTACAGATTCATTCTAA 3018 38.97 MDFCIWSLKSVCVLLLFSCFFHFRSHAQPLPQQEVSALEEISTKLKNLNWKVHQNSCINGDGFSNLFISSSNLREVNCTCTTICHVTSIRLKGLNLVGVLPVEFANLTQLRDLDLTYNFISGSIPRQFGRIPLLTFSIIGNRLSGEIPPEIGDIASLEELILEDNQIGGNLSENLGKLTSLRRLLVSSNNITGSIPESFRNLRNLTEFRVDGTNISGKIPQYIGNWTKLLKLYVQGTSMENPIPPSISDLKNLTELVLRNCLIEGRIPEYIGSFNELRTLDLSFNRLSGPIPETFQNLFVQKTAFMFLNNNSLIGQVPSWIIAQGSSSNRNIDLSYNNFTGISDFSCTQSNNINLVSSSTAKNKSDGWCQMKDLPCSTKPQFDSLFINCGGGSMEFNGSRYEGDDTQGGKANFFFSTQRWGYTTTGVSLLNDHLPFKLSSTNSSVSSSSSPTLYSTARLSPLSLNYYGLCLISGSYNVKLHFAEILFTPDQTYTSLGRRIFDISIQGKLIKKDFNIAEEAGGVGKEFILEVPNVMVNNGSSTLEISLYWAGKGTIYIPYLGVHGPLISAITVTPNFKVETNVETRGLPAGAIAGIVVGIFVFVVLVFVVLRWEGYLGGKETEDDELRDLKLQTGYFSLRQIGAATNSFDSANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLQNNNLARALFSPEKHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWACVLQEEGNLLELVDPNLGSHYSKEEVMRMLHIALLCTNLSPSLRPSMSSVVSMLEGKITVEVSNIKRNTTSREARFKAFDHKLSPDSLTSISTSSQLQGIETQKSMLMDGSWIDSSSTFTQDRDNAREHSSTRSLLTDSF 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30197279 30208498 + ClG42_11g0191900.10 Clacu11g1919 262796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1919 1005 Gene3D Ribonuclease Inhibitor 2 235 IPR032675 -
Clacu11g1919 1005 ProSiteProfiles Protein kinase domain profile. 648 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1919 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 244 342 - -
Clacu11g1919 1005 MobiDBLite consensus disorder prediction 983 1005 - -
Clacu11g1919 1005 SUPERFAMILY L domain-like 64 341 - -
Clacu11g1919 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase 724 931 - -
Clacu11g1919 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1919 1005 Gene3D - 384 575 - -
Clacu11g1919 1005 Pfam Leucine Rich Repeat 277 298 IPR001611 GO:0005515(InterPro)
Clacu11g1919 1005 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515(InterPro)
Clacu11g1919 1005 Pfam Leucine Rich Repeat 252 273 IPR001611 GO:0005515(InterPro)
Clacu11g1919 1005 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515(InterPro)
Clacu11g1919 1005 SMART serkin_6 648 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1919 1005 FunFam Leucine-rich repeat receptor protein kinase EMS1 100 198 - -
Clacu11g1919 1005 SUPERFAMILY Protein kinase-like (PK-like) 632 927 IPR011009 -
Clacu11g1919 1005 Gene3D Transferase(Phosphotransferase) domain 1 724 944 - -
Clacu11g1919 1005 Pfam Protein tyrosine and serine/threonine kinase 651 918 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1919 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 939 IPR051824 -
Clacu11g1919 1005 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 617 723 - -
Clacu11g1919 1005 Gene3D Ribonuclease Inhibitor 236 358 IPR032675 -
Clacu11g1919 1005 SMART LRR_typ_2 178 201 IPR003591 -
Clacu11g1919 1005 SMART LRR_typ_2 107 130 IPR003591 -
Clacu11g1919 1005 SMART LRR_typ_2 274 297 IPR003591 -
Clacu11g1919 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 382 575 - -
Clacu11g1919 1005 Pfam Malectin domain 385 570 IPR021720 -
Clacu11g1919 1005 CDD STKc_IRAK 654 921 - -
Clacu11g1919 1005 Gene3D Phosphorylase Kinase; domain 1 617 723 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1917 Clacu-Chr11:30161371 Clacu11g1919 Clacu-Chr11:30197279 8.60E-202 dispersed
Clacu11g1918 Clacu-Chr11:30185620 Clacu11g1919 Clacu-Chr11:30197279 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73995 PF07714 PK_Tyr_Ser-Thr 2.90E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1919 - - - 0.0