Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1946 ATGAATGAATGTGGTTTATGTGTGCTGTTTGATGGAGTTGGATTGAGGGGAAAGATGAGATTCAAGCGGTTTCTGACAATTGTCCTTATGAGATTTCTGCAAATGGGTATGAATGGGGTTTTTAAAATTTTGTTTTCTTCTTCTCGTTTGTCGGATTTCTGGAAACTGTTCTTTGATTTGGCTCCAGGGAAGAGAAATAGAGGCGGGGATGATGGCTTTGAGGGATCTGCAAGCGAAGACATTATTTTTAGGGAGGTTTTCTTTGGCAACAGCTCTAGCCATTCCAATAGGAGGTGTCCTCACAAGGTAGTTAGTCATGAATGCGGGCCCTGTAAAATTAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCTAGTTATTCATACTCAAGAAATATGAAGCTTGATGAATGTTACAATGCTACGGAGAATATTAGGACCAGTTCTGCACCTAATAGTCTGCCATGCAAATGGACTTCAGTGCAAGGCGACAACGTGAATGCAAGTGCTAAGCGAATAAAACTGTCAACTGATGAAGCCTCTGATTCTGTATCCAATCTAGTTAAGGTTATGAAATCATCAGATGGTATAAGAGAACCTGTTTCCACTAATTGCTGTCCAGCTGAGGACTGTGATTCTGAATCATTTACATTCCACATTGTAGAATCTTCTAGACAGGGAATTATATCAAGTTGCTATCTGCTTAAGCACTTTGTTGAAAGGGACAATAATCTGGGTGATCCCAATGCCTCCAAACGAACATCACTGAATTTAGAAGGTAACGATGAACCCAATGTGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTCTTGGTAGCAAGTCCTGATACTCTCAACGAGAAGTTTGGATCTCCACTGCATCTAGAGGTAGGACAAATGAAATTTCTATGTCCAGAACTGGATACTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTACCATGTTGTTCACCTGTTTATTGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGTCGGCGTTATATGGAAACGATGTACAGGTCACCCCAGGGAAGAGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTTCTGTTTGCTGATAAGTGTAGTTTTGCAAAGAAAGTTGACAGCAGAGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGACACATTGTTACAGGTTGGGAACGAAATGAATCAATTAGGGGCTACAACTTCATTGGCTCATTGCTGGGCTATTCTAGATCCCTATGTGGTGGTTGTGTTCATTGACAGAAAGATCGGTACCCTTAGGAAGGGAGATTTAGTTAGAGCTACCTGTAGTATTGGGGTTAATGGGAACAATAAGACCGATACTTTCGTGACATTAAAAAATGAAGACAGTAGTATCTGTAACCTATCTGCTGACAAAAACCCGTCACCACCACATGATAATTCACCATCTGCCAAGAGTGCATTGACAGAGGCGGCATTAAAAGATCTTGATGGGGGCAATTGTGCTTTTGATGAGCAAATCTGTGATACAAGTTTCTCCAATTACTATGGGCATACAGAAGATGGAACAATGAACTTTCTGACAAAGGTGTCTAATTATGACCCCAATTTGGGGAACAGTCTGAATTGCATGGGCAGTCATTGTAATGAACCTGGAAACAAGATAGACACTGAGGATTTAACTTCATTACCTGCTTATTTTTCAGGCTCCACCTGCAAACCTAGATGTCTGGCTGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCCTTACATCTCCCGATGAGGATAGCACTTTGTGTTGTTCGGATGAACAAAGCTCTGAAAATCATGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTAACGTGTTCCCTAGTAGAAGAAAAAAAGGTGGAAGTCCCACTTGATGATAAGGTGGAGAATAATTTGGAAGAATCTCTGAATAACTGTCCAAACTATACAAGTGACGATTTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCTTCAATGTTCAAAACAGAGAATAAAGTTTCTGCTACACATTCTATTTTGAAGAAGAAAGGACGTCGAAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGCCACCTCATATTGATATTGTGAGTGTGACTCCTGGAAAGAAAACTGAGTTGTGGGATATTGATGGGAATTGCTCTCAGTTAGATATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAACGTGGACGATCACGAGAAGAGCTTGTCTCTCAGTCCTGTTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAATAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAGAAATCGAATGAATGTCAAATTGAAGATGACGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATCTTCCCATGTAAGGAAATACTTAAAATCTAGAGCAAAAATGAACCGCAAAAGACAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCATAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCGAATGATATAATCCAATACCAAAGCCCTAAGGATGACAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATCTGCAATTGCTGCGGTGAGCTACTCTCAATATCTGGATTTAAAAGTCACGCAGGTTTCAAATTTAATCGCCCTTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACTGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATCTGCTGTGATAATTGCCCTTCTACATTCCATCATTCTTGTTTGTCAGTTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAATTGTACATGCCAGATATGTGGTGGTCTTGTGAATTATGAAGAGACTTCAAGTTCGTCTGATGCGCTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCGATGCCTGAAACAAAAAGACATCGATTCTGGAGTAGAATCTCATGTTTGGTTTTGTAGTGGGAGTTGCCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAATGACCAGAAAATTCTGTCTACCCCACGCTTAGCTATGATGGCAGAATGTAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGGACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTGCTGCTATGCGTAGCTTCTATCAGGGTACATGGATCAGAAGTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAAGGAATGTGTAGGCGTCTACTGAATGCTATTGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAAGGTTTTGGCTTTGTACCTGTGGAAAATGATGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAATACTCCTAAAGAAGGCTCTGTATTTAAGTGGCCAAAATACAGAGACAACAGAAGGAATTCACTCAGGAGTACAACTTGACACCGATGCTAAACGACAATGCAATTCCAACGAAGCATGTCCTAGAATGGAAATAAAATGTTCAAAATATCAAGAATTGCAAGAACACAATCATGAAAAGATGATGGACGACCACGAAGGAAATCCAGCTCTTCCGATTGATTCATCTACGTTGCAGGTGGTTGAATCAAATGGAATGGATACTTCTTCAGGACAAAAGTCTGTTGAGTCAGTACCTCAACCTGATGGAAACTATTGCACTGACATAGTTGGTGCCACAACCGAAACCCGCACGCACAAGGGGAAAGAGTCATTAGAAGTAGAAGTTGGCGCAAAACATGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTCCATGCAGCCACGATGACAAGATTTGTAGAACCTGTTGTTCTAACTTAG 4395 40.82 MNECGLCVLFDGVGLRGKMRFKRFLTIVLMRFLQMGMNGVFKILFSSSRLSDFWKLFFDLAPGKRNRGGDDGFEGSASEDIIFREVFFGNSSSHSNRRCPHKVVSHECGPCKINDASLCSSSELSTVSSYSYSRNMKLDECYNATENIRTSSAPNSLPCKWTSVQGDNVNASAKRIKLSTDEASDSVSNLVKVMKSSDGIREPVSTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVERDNNLGDPNASKRTSLNLEGNDEPNVVNKVSASPVSQESSMTRLLVASPDTLNEKFGSPLHLEVGQMKFLCPELDTSLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETMYRSPQGRAIREFSKAWRVCGELLFADKCSFAKKVDSREWTGIHQFLFDLSDTLLQVGNEMNQLGATTSLAHCWAILDPYVVVVFIDRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLKNEDSSICNLSADKNPSPPHDNSPSAKSALTEAALKDLDGGNCAFDEQICDTSFSNYYGHTEDGTMNFLTKVSNYDPNLGNSLNCMGSHCNEPGNKIDTEDLTSLPAYFSGSTCKPRCLADGPVPSGNSDNVVRISGLTSPDEDSTLCCSDEQSSENHVEKPNEMVKNVLTCSLVEEKKVEVPLDDKVENNLEESLNNCPNYTSDDLSHSCASGVVQKSSQNEEGGLHFSASMFKTENKVSATHSILKKKGRRKCKKISEIKPTLPPHIDIVSVTPGKKTELWDIDGNCSQLDMIEDQKSHIADTKNVDDHEKSLSLSPVSCHSERKGSKFNKNFDSLKGSKTRKKKSNECQIEDDDLLVSAIIRNKDVSSSAAGSSHVRKYLKSRAKMNRKRQKSSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCGELLSISGFKSHAGFKFNRPCLNLFLDSGRPFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSVQELPEGNWYCLNCTCQICGGLVNYEETSSSSDALKCSQCEQKYHGRCLKQKDIDSGVESHVWFCSGSCQKIYTALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFVPVENDEKQSLHRFNLMVFPGTILLKKALYLSGQNTETTEGIHSGVQLDTDAKRQCNSNEACPRMEIKCSKYQELQEHNHEKMMDDHEGNPALPIDSSTLQVVESNGMDTSSGQKSVESVPQPDGNYCTDIVGATTETRTHKGKESLEVEVGAKHDIQLSEGKSWDEGVHAATMTRFVEPVVLT 1464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30411163 30425120 - ClG42_11g0194600.10 Clacu11g1946 262823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1946 1464 MobiDBLite consensus disorder prediction 1386 1407 - -
Clacu11g1946 1464 CDD PHD2_CHD_II 1012 1052 - -
Clacu11g1946 1464 Pfam Tify domain binding domain 935 985 IPR032308 -
Clacu11g1946 1464 FunFam Increased DNA methylation 1 1003 1055 - -
Clacu11g1946 1464 Gene3D - 1183 1297 - -
Clacu11g1946 1464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1003 1054 IPR013083 -
Clacu11g1946 1464 MobiDBLite consensus disorder prediction 785 808 - -
Clacu11g1946 1464 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1199 1284 IPR016181 -
Clacu11g1946 1464 SUPERFAMILY FYVE/PHD zinc finger 990 1053 IPR011011 -
Clacu11g1946 1464 Pfam PHD-finger 1013 1052 IPR019787 -
Clacu11g1946 1464 ProSiteProfiles Zinc finger PHD-type profile. 1010 1055 IPR019787 -
Clacu11g1946 1464 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1146 1310 IPR000182 GO:0016747(InterPro)
Clacu11g1946 1464 PANTHER PHD FINGER FAMILY PROTEIN 172 1356 - -
Clacu11g1946 1464 SMART PHD_3 1012 1053 IPR001965 -
Clacu11g1946 1464 SMART PHD_3 1054 1108 IPR001965 -
Clacu11g1946 1464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1055 1112 IPR013083 -
Clacu11g1946 1464 CDD NAT_SF 1204 1264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1946 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2256 Clacu-Chr5:30978512 Clacu11g1946 Clacu-Chr11:30411163 8.10E-79 dispersed
Clacu11g1946 Clacu-Chr11:30411163 Clacu09g0704 Clacu-Chr9:6134612 2.30E-110 transposed
Clacu11g1946 Clacu-Chr11:30411163 Clacu06g0608 Clacu-Chr6:7013823 2.30E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48693 PF16135 TDBD 1.00E-15 No_clan Clacu TR