Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1954 ATGAGAAAGTTTCCCTTTCTGTTTCCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGAAAGCATGAAACCGAAAGAAATGTGAGTGCAACAATGGTTGATGATGGAAAGGGCAGAATAGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCTGTACTAGCATTAGCTAATGAAATACCAAAGTGGGCAACTGAGAGGTTCAAATTTTTGGTTCAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCTAAAGAACTGGAAAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGAGATAGCAAACAAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTATGCTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCCATATCATGAATTTTATCGTCGGTTTTCTCAAAGGTTTAGATTAGAGTATTTTGATGAGGACAACAACGAGCCTGGTATTTTTGCTGTACAGGCTTATGATGCTGCAATGACAGTGGCTATGGCTATGAGTGAAATCCAAGAAAAGGGTAATCACTTGTTAGAAAAAATAAAGCTCACTCACTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAATTAGCCCCAGCTGATACTTTCCAGATTATCAATGTGGTGGGGAGAAGTTATAGGGAACATAGCTTCTGGTCTGATAAATCAGGCTTCTCAAGAGAGCTGAGGGAAAATTCATCTTCTAGCTTGTCGATGAAGAATCTTGGTGAAATGTTTTGGCCAGGTGGATCTTCAAAAACACCGAGGGGATGGGTCATACCAATGGATGCCAATTCATTGAGGATTGGGGTGCCAGTTAGTTCCATGTTCAAACAGTATGTACATATGGGAAAAAATTTATTCTTCGATGGACTTGCAATTGATCTGTTTGAAGCAACTTTAGACTACCTTCCTTTTGCTCTACCACGTGTCTTCTGTCCTTTCAATGGAACTTATGATGATTTAGTGCAAGGAATCTACTTGAAGAAATATGATGCAGCAATAGGTGACATAGCAATAACAACAAAACGCTTAGACCATGCAGAATTTACACATCCTTACTCTGAAGCAGGATTGGTGATGATAGTTCCTACCAGAAAAGACACAAGGAACAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTCGTCGTGTGGTTCATAGAACGAAATCACTGTCCTGAACATGAAGGTTCAATGTTTGATCAAGCTGGAGCTATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCACGGTAATAGGCTGCATAGTAACTTATCGCGGATGGCTATGGTGGCTTGGCTATTTATGGCACTTGTGATAACTCAGACATACACAGCTAATCTTGCTAGCATGCTCACTATTCAAAAGTTTGAAGCGACGATATCGAATATTGAGACTCTCCATAGAAAAAATGCATCTGTGGGAAACGGAAGAGGAACCTTTGTCCAAAGATATTTGGAAGAAGTTTTAGACTTTCCAGCGGAAAATATAAAAGGCTACAGTACCCCGAACGATCTAGTCAACGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCAAGATTTTGCAAGGAATTCGTGATTTCTGGACCAACCTACCTTGTTGGAGGATTTGGATTTGCATTTCCGACTGGCTCTCCGCTGTTACGAGATTTTAACAAAGCACTGCTTAAGGTATCTGAAACTGGGAAGTATAGAAAGTTGGAGGAAAGCATGATTGCTAGTGAGAAATGTGAGGATAGTAATGCAAAAGATGAAAGTTCAAGCCTTAGCCCCAACAGCTTCTTTTTACTATTTTCATTGAGTGGAGGAGTATCAACAATGGCATTAACATTGTACATTATCAATGCTCATAAATCTTGTCTTCAACATAATGCTATTTGGAGATTAATGTTAGCTGTAATTAAGGGCTGGAGAAATCACAGCAAGGGATTTTCTCGACGAGTAAGCGATGAGCCACAGACCGTCCCAAAGAACTTCCCAAAGGCTACAAACTTGCAAATCCAGGTCTAG 2592 39.97 MRKFPFLFPFLLFALIVSGKHETERNVSATMVDDGKGRIGAIVDLSSRIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEVGNENQIPVLALANEIPKWATERFKFLVQASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAEVSEFVGLSQFDSDLFSKELEKLRRGSCRIFVVHMSFKLALHLFEIANKMGMMGKDYVWITTDTFTSLAHSFNVSINSMLQGVVGVKSYFPERNPPYHEFYRRFSQRFRLEYFDEDNNEPGIFAVQAYDAAMTVAMAMSEIQEKGNHLLEKIKLTHFQGLSGKIQFKDRKLAPADTFQIINVVGRSYREHSFWSDKSGFSRELRENSSSSLSMKNLGEMFWPGGSSKTPRGWVIPMDANSLRIGVPVSSMFKQYVHMGKNLFFDGLAIDLFEATLDYLPFALPRVFCPFNGTYDDLVQGIYLKKYDAAIGDIAITTKRLDHAEFTHPYSEAGLVMIVPTRKDTRNKALLFTKPFTVTMWILIAVVTAYNGFVVWFIERNHCPEHEGSMFDQAGAMLCSSFTTLFSLHGNRLHSNLSRMAMVAWLFMALVITQTYTANLASMLTIQKFEATISNIETLHRKNASVGNGRGTFVQRYLEEVLDFPAENIKGYSTPNDLVNALRNQEIAAAFLEVPFAKLFLARFCKEFVISGPTYLVGGFGFAFPTGSPLLRDFNKALLKVSETGKYRKLEESMIASEKCEDSNAKDESSSLSPNSFFLLFSLSGGVSTMALTLYIINAHKSCLQHNAIWRLMLAVIKGWRNHSKGFSRRVSDEPQTVPKNFPKATNLQIQV 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30522757 30525997 + ClG42_11g0195400.10 Clacu11g1954 262831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1954 863 Gene3D - 315 433 - -
Clacu11g1954 863 SUPERFAMILY Periplasmic binding protein-like II 412 763 - -
Clacu11g1954 863 Gene3D - 434 540 - -
Clacu11g1954 863 FunFam Glutamate receptor 540 678 - -
Clacu11g1954 863 Pfam Ligand-gated ion channel 764 795 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu11g1954 863 FunFam Glutamate receptor 150 311 - -
Clacu11g1954 863 Gene3D - 153 309 - -
Clacu11g1954 863 SMART GluR_14 435 768 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu11g1954 863 Pfam Receptor family ligand binding region 55 377 IPR001828 -
Clacu11g1954 863 SUPERFAMILY Periplasmic binding protein-like I 38 427 IPR028082 -
Clacu11g1954 863 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 826 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu11g1954 863 Pfam Bacterial extracellular solute-binding proteins, family 3 445 548 IPR001638 -
Clacu11g1954 863 Gene3D - 37 152 - -
Clacu11g1954 863 CDD GluR_Plant 434 766 - -
Clacu11g1954 863 Gene3D - 669 770 - -
Clacu11g1954 863 CDD PBP1_GABAb_receptor_plant 38 396 IPR044440 -
Clacu11g1954 863 PIRSF IGluLR_plant 1 848 IPR017103 -
Clacu11g1954 863 Gene3D - 541 668 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1954 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1953 Clacu-Chr11:30513344 Clacu11g1954 Clacu-Chr11:30522757 0.00E+00 tandem
Clacu11g1954 Clacu-Chr11:30522757 Clacu11g1955 Clacu-Chr11:30530072 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68