Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1955 ATGGGAAAGTTTCCTTTTCTGTTTACTTTCTTGTTGTTTGCTTTGGTAGTTTCTGGAGAGCATGAAACTGAAGGAAACACAAACTCGACGATGAATGATAGTGGAAAGGGCAGAATAGGGCTCATAGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAAGATTTTAACTCCTTCAGCAATCAAAGTTTTAGTCTTGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGAAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTTCATCCATAGTTGCTGAGGTTGGAAATGAGAAACAGGTTCCAGTTCTAACGTTAGCTAATGAAATACCAAAATGGGCGACCGAGAGGTTCAAATTTTTGGTTCAAGCTTCTCCCTCCCAACTACATCAAATGAGGGCTATAGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTAATATATGAAGATAGAGATTTCTCAACCACCGGAATATTTCCTCATCTTGTACATGCCCTCCAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTTTGATTTATTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATATTTGTAGTTCATATGTCTTTCAAGTTGTCACTGTGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGAAAAACGACTATGTTTGGATCACTACTGATTCTTTCACAAACCTTGCACATTCTTTCAATGCTTCTATCAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGGACAACAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGGAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCGGTGGAAAGATTCAGTTTAAGGACAGAAAACTAGCCCTATCTGATACTTTTCAGATCATTAATGTGATGGGGAGGAGTTATAGGGATTTAGGCTTCTGGTCGGATAAGTTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGGATCTTTGATATCTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCTACTAGTTCCATGTTCAGACAGTATGTACATGTGGAAGAAGATCCTTTGGGAAATAATTTATCCTTCAATGGACTTGCAATTGATCTGTTCAAAGCAACCTTAGACAACCTTAACTTCCCTCTGTCCTACCACTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCACGGCGCTATGAACATGCGGAGTTTACGCATCCTTACTCAGAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACAGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGCAATCGGTATCCCGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCATTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCACAGTAACTTGTCTAGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTCGAACCGACGATAACGAATATCGAAACTCTCCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCATTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTCATGATTATGCCGAAGCTCTCAGAAAGCGAGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGTAGGGAATTCATGGTATCTGGACCAACCTACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGAGGCTCTCCGCTTTTAACGGATATTAACGAAGCATTGCTCAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGGGGATGCAAAGGGTGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATATTATTTGTATTGAGTGGAGGAGTATCAACCATAGCTCTTACATTATACATCTTTAATGCTCATAACTTCAGTTTTCAACAGAATACCATTTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGTAAGTGATGAACCGCAAATGACTGTCTCAAATAACTTCTCGAACGCCACGAACTTGCAAATTCAGGTCTAG 2619 40.47 MGKFPFLFTFLLFALVVSGEHETEGNTNSTMNDSGKGRIGLIVDKSSRIGKEEILAMQMAIEDFNSFSNQSFSLVIRDYKSDPNLAALEANDLISMQQVQVLIGPQTWEASSIVAEVGNEKQVPVLTLANEIPKWATERFKFLVQASPSQLHQMRAIAGIISSWDWHLVNVIYEDRDFSTTGIFPHLVHALQDVGAEVSEFVGLSQFDFDLFSKELERLRRGSSRIFVVHMSFKLSLCLFEIAKEMGMMKNDYVWITTDSFTNLAHSFNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTTAMAMSEIQEKGNHLLEKIKLTDFQGLGGKIQFKDRKLALSDTFQIINVMGRSYRDLGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGGSLISPRGWVVPTDANSLRIGVPTSSMFRQYVHVEEDPLGNNLSFNGLAIDLFKATLDNLNFPLSYHFFRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSEAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTITNIETLQRANALVGFGRGSFVKRYLEEVLHFRAENIRNYSTPHDYAEALRKREIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFRDLEDSMIANEKCEDGDAKGENSSLSPNSFFILFVLSGGVSTIALTLYIFNAHNFSFQQNTIWRLMIAVMRHWGKHRRQFSRRVSDEPQMTVSNNFSNATNLQIQV 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30530072 30533388 + ClG42_11g0195500.10 Clacu11g1955 262832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1955 872 Gene3D - 437 548 - -
Clacu11g1955 872 Gene3D - 329 436 - -
Clacu11g1955 872 FunFam Glutamate receptor 153 314 - -
Clacu11g1955 872 Pfam Ligand-gated ion channel 772 804 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu11g1955 872 Pfam Receptor family ligand binding region 55 378 IPR001828 -
Clacu11g1955 872 PIRSF IGluLR_plant 1 871 IPR017103 -
Clacu11g1955 872 Gene3D - 724 781 - -
Clacu11g1955 872 FunFam Glutamate receptor 432 547 - -
Clacu11g1955 872 CDD GluR_Plant 437 774 - -
Clacu11g1955 872 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 823 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu11g1955 872 SUPERFAMILY Periplasmic binding protein-like II 415 771 - -
Clacu11g1955 872 SMART GluR_14 438 776 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu11g1955 872 CDD PBP1_GABAb_receptor_plant 38 399 IPR044440 -
Clacu11g1955 872 FunFam Glutamate receptor 548 686 - -
Clacu11g1955 872 Gene3D - 155 314 - -
Clacu11g1955 872 Gene3D - 549 691 - -
Clacu11g1955 872 Gene3D - 36 154 - -
Clacu11g1955 872 SUPERFAMILY Periplasmic binding protein-like I 38 429 IPR028082 -
Clacu11g1955 872 Pfam Bacterial extracellular solute-binding proteins, family 3 462 556 IPR001638 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1955 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1124 Clacu-Chr8:21222893 Clacu11g1955 Clacu-Chr11:30530072 3.20E-116 dispersed
Clacu08g1759 Clacu-Chr8:27009592 Clacu11g1955 Clacu-Chr11:30530072 9.00E-85 dispersed
Clacu11g1953 Clacu-Chr11:30513344 Clacu11g1955 Clacu-Chr11:30530072 0.00E+00 dispersed
Clacu11g1955 Clacu-Chr11:30530072 Clacu11g2067 Clacu-Chr11:31582500 1.10E-104 dispersed
Clacu11g1954 Clacu-Chr11:30522757 Clacu11g1955 Clacu-Chr11:30530072 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68