Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1957 ATGGCAGCCTATAGAACGGACGACGATTACGATTACCTCTTTAAAGTGGTTCTCATCGGTGACTCGGGTGTGGGCAAATCCAATCTTCTCTCAAGGTTTACGCGTAATGAGTTCAGTCTTGAGTCCAAATCCACAATCGGTGTTGAATTTGCCACTCGGAGTATTCGGGTTGATGACAAGATCGTCAAGGCTCAGATTTGGGACACCGCTGGCCAAGAAAGATACCGTGCAATCACAAGTGCATACTATCGAGGAGCTGTTGGTGCATTGCTTGTCTATGATGTCACACGACATGTGACATTCGAAAATGTTGAGAGATGGTTGAAAGAGCTTAGGGATCACACCGATTCCAATATTGTGATAATGCTAGTCGGCAATAAGGCAGACTTGCGACATCTGCGTGCTGTTTCAACTGAGGATGCCAAGGCCTTTGCAGAGAAGGAGAACACATTCTTCATGGAGACATCTGCCCTTGAGTCTCTGAATGTCGAGAATGCTTTTACCGAAGTGCTAACCCAAATCTATCGTGTAGTCTGCAGAAAAGCGCTCGAGATTGGTGAGGATCCTGCAGCATTGCCTAAAGGACAAACCATTAACGTTGGAAACAAGGATGATGTTTCTGCAGTGAAGAAAGTTGGTTGCTGCTCTTCATGA 654 45.87 MAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVCRKALEIGEDPAALPKGQTINVGNKDDVSAVKKVGCCSS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30549033 30550752 + ClG42_11g0195700.10 Clacu11g1957 262834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1957 217 ProSiteProfiles small GTPase Rho family profile. 7 179 - -
Clacu11g1957 217 CDD Rab11_like 11 175 - -
Clacu11g1957 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g1957 217 Gene3D - 6 215 IPR027417 -
Clacu11g1957 217 ProSiteProfiles small GTPase Ras family profile. 2 217 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g1957 217 PANTHER DRAB11-RELATED 10 187 IPR050209 GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005768(PANTHER)|GO:0016192(PANTHER)
Clacu11g1957 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Clacu11g1957 217 SMART ras_sub_4 11 177 - -
Clacu11g1957 217 SMART ran_sub_2 19 216 - -
Clacu11g1957 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Clacu11g1957 217 SMART rab_sub_5 14 177 - -
Clacu11g1957 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Clacu11g1957 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Clacu11g1957 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Clacu11g1957 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Clacu11g1957 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Clacu11g1957 217 Pfam Ras family 15 175 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g1957 217 NCBIfam small GTP-binding protein domain 12 170 IPR005225 GO:0005525(InterPro)
Clacu11g1957 217 FunFam ras-related protein RABA1f 6 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1957 K07904 - - csv:101210695 425.631
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1020 Clacu-Chr7:24634170 Clacu11g1957 Clacu-Chr11:30549033 3.70E-89 dispersed
Clacu10g1246 Clacu-Chr10:25300827 Clacu11g1957 Clacu-Chr11:30549033 6.00E-71 dispersed
Clacu11g1957 Clacu-Chr11:30549033 Clacu09g1069 Clacu-Chr9:10154840 3.40E-26 dispersed
Clacu01g1931 Clacu-Chr1:31412116 Clacu11g1957 Clacu-Chr11:30549033 3.80E-68 transposed
Clacu02g0104 Clacu-Chr2:1129486 Clacu11g1957 Clacu-Chr11:30549033 3.80E-30 transposed
Clacu02g1048 Clacu-Chr2:16640115 Clacu11g1957 Clacu-Chr11:30549033 2.10E-108 transposed
Clacu04g0084 Clacu-Chr4:1808967 Clacu11g1957 Clacu-Chr11:30549033 3.60E-71 transposed
Clacu06g1541 Clacu-Chr6:26336845 Clacu11g1957 Clacu-Chr11:30549033 4.60E-59 transposed
Clacu11g0805 Clacu-Chr11:7965318 Clacu11g1957 Clacu-Chr11:30549033 1.20E-79 transposed
Clacu11g1957 Clacu-Chr11:30549033 Clacu07g0251 Clacu-Chr7:2877192 3.10E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g151 . . . . . . . . . . Cma01g01232 Cma09g00833 Car01g01053 Car09g00748 . Cpe06g00664 Cpe02g00684 Bhi09g03479 . . . Hepe01g1418 Mch11g1033 . Cla11g01728 Cam11g1798 Cec11g1819 Cco11g1825 Clacu11g1957 Cmu11g1767 Cre11g2175 . Cone10ag1362 . . Lsi04g02036 Csa04g02308 Chy07g00044 Cme07g00557 . . . . . . . . . Cmo01g01285 Cmo09g00827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209