Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1969 ATGGCTGCCGGAGACCGGTCGACATCCACCGCCTCAACCGCTGCGCCGCCTCATTCTAAAGAGATCCGCTACAGGGGCGTCAGAAAGAGGCCGTGGGGCCGCTACGCCGCGGAAATCCGGGACCCACGTAAGAAGACTAGGGTTTGGCTTGGCACATTCAACACCGCGGAAGAGGCGGCGCGTGCTTATGACACGGCCGCGCGTGAATTTAGAGGCGTTAATGCCAAAACTAACTTCCCCCTTCAGAACGAATTCCTAATCGTCGACAACAATAACAACAACTTCCGTAAATCCGCTGGCAGCAGTAGTCCCAGCCAGTGCAGCACCGTCGAATCCTCTTCCCCGTCGCCAGCGCCGTCGGATCCTTCCCTCACTCACTTCCTCGACGGCGGCGTCCACGCGCCGGCCACTAACCGCCCAATTTTCTTCTTCGACGCGTTCGCTCAGGCAGAGAAGATCAGTGACTATCGTCGGGCCGTTACCGTCGCCGTCGCCGGTGCTGGCGAATCCGTGAGCGACTCCGACTCGTCATCCGTAGTTGATTTCGACAGTACGCGGAAATCTCGGCCGTTGGATTTTGACCTGAATCTTCCGGCTGTGGAAGTTGTTTGA 612 58.33 MAAGDRSTSTASTAAPPHSKEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGVNAKTNFPLQNEFLIVDNNNNNFRKSAGSSSPSQCSTVESSSPSPAPSDPSLTHFLDGGVHAPATNRPIFFFDAFAQAEKISDYRRAVTVAVAGAGESVSDSDSSSVVDFDSTRKSRPLDFDLNLPAVEVV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30637667 30638278 + ClG42_11g0196900.10 Clacu11g1969 262846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1969 203 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677(InterPro)
Clacu11g1969 203 MobiDBLite consensus disorder prediction 1 16 - -
Clacu11g1969 203 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1969 203 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1969 203 PIRSF PTI6 3 134 IPR017392 GO:0003700(InterPro)
Clacu11g1969 203 PIRSF PTI6 136 194 IPR017392 GO:0003700(InterPro)
Clacu11g1969 203 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1969 203 MobiDBLite consensus disorder prediction 96 121 - -
Clacu11g1969 203 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Clacu11g1969 203 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1969 203 MobiDBLite consensus disorder prediction 1 20 - -
Clacu11g1969 203 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1969 203 MobiDBLite consensus disorder prediction 96 129 - -
Clacu11g1969 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 164 - -
Clacu11g1969 203 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1969 203 CDD AP2 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1969 K09286 - - csv:101213540 263.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1923 Clacu-Chr8:28332958 Clacu11g1969 Clacu-Chr11:30637667 1.90E-20 dispersed
Clacu10g0490 Clacu-Chr10:5979048 Clacu11g1969 Clacu-Chr11:30637667 6.00E-23 dispersed
Clacu10g1110 Clacu-Chr10:23517816 Clacu11g1969 Clacu-Chr11:30637667 4.40E-21 dispersed
Clacu11g1969 Clacu-Chr11:30637667 Clacu01g0451 Clacu-Chr1:4496963 2.30E-16 dispersed
Clacu01g2400 Clacu-Chr1:34631054 Clacu11g1969 Clacu-Chr11:30637667 1.70E-29 wgd
Clacu11g1969 Clacu-Chr11:30637667 Clacu07g0244 Clacu-Chr7:2841680 6.20E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006814 3 1 2 1 2 0 2 1 0 1 1 1 2 1 1 2 0 2 0 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48697 PF00847 AP2 5.70E-14 CL0081 Clacu TF