Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1974 ATGAGTCGTAGAGTGAGATTCACCTTGAAAAAGAGTACAAAGGAGGAAGAGATCTATGGTGTTATTGCTCAGAATAAATCAGTTCCTCCTAATGTTCTTTTGAATCGCATTCTTGGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATATAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGAAATGCACCACGCGACATATCAGAGAACACTAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATATCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAACGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCGGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATGGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAATACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTTCAGCTTAA 2361 41.38 MSRRVRFTLKKSTKEEEIYGVIAQNKSVPPNVLLNRILGVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRDISENTRDSYSMGDASEDEELSGSGTVVIRSPRGYQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINMEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPENTQNVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSSA 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30675950 30692903 - ClG42_11g0197400.10 Clacu11g1974 262851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1974 786 Coils Coil 134 161 - -
Clacu11g1974 786 CDD STKc_MST3_like 107 380 - -
Clacu11g1974 786 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Clacu11g1974 786 Pfam Protein kinase domain 109 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1974 786 SMART serkin_6 108 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1974 786 MobiDBLite consensus disorder prediction 548 580 - -
Clacu11g1974 786 FunFam serine/threonine-protein kinase dst1 isoform X1 105 394 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 374 389 - -
Clacu11g1974 786 SUPERFAMILY Protein kinase-like (PK-like) 106 392 IPR011009 -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 737 762 - -
Clacu11g1974 786 ProSiteProfiles Protein kinase domain profile. 108 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1974 786 Gene3D Transferase(Phosphotransferase) domain 1 105 395 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 600 619 - -
Clacu11g1974 786 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 106 753 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Clacu11g1974 786 MobiDBLite consensus disorder prediction 594 631 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 374 506 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 548 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0512 Clacu-Chr5:4272361 Clacu11g1974 Clacu-Chr11:30675950 2.50E-54 dispersed
Clacu05g0665 Clacu-Chr5:5573719 Clacu11g1974 Clacu-Chr11:30675950 9.00E-35 dispersed
Clacu10g0086 Clacu-Chr10:1161444 Clacu11g1974 Clacu-Chr11:30675950 7.10E-60 dispersed
Clacu11g1352 Clacu-Chr11:23296682 Clacu11g1974 Clacu-Chr11:30675950 1.70E-70 dispersed
Clacu11g1974 Clacu-Chr11:30675950 Clacu10g1289 Clacu-Chr10:25826814 1.20E-28 dispersed
Clacu11g1974 Clacu-Chr11:30675950 Clacu05g0965 Clacu-Chr5:8561300 3.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73996 PF00069 Pkinase 2.80E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1974 K08838 - csv:101214412 1252.27