Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1974 ATGAGTCGTAGAGTGAGATTCACCTTGAAAAAGAGTACAAAGGAGGAAGAGATCTATGGTGTTATTGCTCAGAATAAATCAGTTCCTCCTAATGTTCTTTTGAATCGCATTCTTGGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATATAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGAAATGCACCACGCGACATATCAGAGAACACTAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATATCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAACGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCGGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATGGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAATACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTTCAGCTTAA 2361 41.38 MSRRVRFTLKKSTKEEEIYGVIAQNKSVPPNVLLNRILGVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRDISENTRDSYSMGDASEDEELSGSGTVVIRSPRGYQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINMEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPENTQNVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSSA 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30675950 30692903 - ClG42_11g0197400.10 Clacu11g1974 262851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1974 786 Coils Coil 134 161 - -
Clacu11g1974 786 CDD STKc_MST3_like 107 380 - -
Clacu11g1974 786 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Clacu11g1974 786 Pfam Protein kinase domain 109 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1974 786 SMART serkin_6 108 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1974 786 MobiDBLite consensus disorder prediction 548 580 - -
Clacu11g1974 786 FunFam serine/threonine-protein kinase dst1 isoform X1 105 394 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 374 389 - -
Clacu11g1974 786 SUPERFAMILY Protein kinase-like (PK-like) 106 392 IPR011009 -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 737 762 - -
Clacu11g1974 786 ProSiteProfiles Protein kinase domain profile. 108 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1974 786 Gene3D Transferase(Phosphotransferase) domain 1 105 395 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 600 619 - -
Clacu11g1974 786 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 106 753 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Clacu11g1974 786 MobiDBLite consensus disorder prediction 594 631 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 374 506 - -
Clacu11g1974 786 MobiDBLite consensus disorder prediction 548 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1974 K08838 - - csv:101214412 1252.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0512 Clacu-Chr5:4272361 Clacu11g1974 Clacu-Chr11:30675950 2.50E-54 dispersed
Clacu05g0665 Clacu-Chr5:5573719 Clacu11g1974 Clacu-Chr11:30675950 9.00E-35 dispersed
Clacu10g0086 Clacu-Chr10:1161444 Clacu11g1974 Clacu-Chr11:30675950 7.10E-60 dispersed
Clacu11g1352 Clacu-Chr11:23296682 Clacu11g1974 Clacu-Chr11:30675950 1.70E-70 dispersed
Clacu11g1974 Clacu-Chr11:30675950 Clacu10g1289 Clacu-Chr10:25826814 1.20E-28 dispersed
Clacu11g1974 Clacu-Chr11:30675950 Clacu05g0965 Clacu-Chr5:8561300 3.10E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1974 . 99 786 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 3.0e-225 778.5
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.4e-67 252.3
Clacu11g1974 . 99 783 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 3.6e-231 798.1
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.3e-67 253.4
Clacu07g0694 . 60 898 MAP Kinase Kinase Kinase Kinase AT1G69220 58.0 3.1e-242 835.1
Clacu11g1352 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.2e-241 833.2
Clacu09g1946 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.6e-253 870.5
Clacu05g0512 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Clacu10g0086 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 5.8e-248 854.0
Clacu10g0086 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 2.8e-247 851.7
Clacu10g0086 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Clacu09g1946 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Clacu10g0086 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Clacu05g0512 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.6e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73996 PF00069 Pkinase 2.80E-68 CL0016 Clacu PK