Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1974 | ATGAGTCGTAGAGTGAGATTCACCTTGAAAAAGAGTACAAAGGAGGAAGAGATCTATGGTGTTATTGCTCAGAATAAATCAGTTCCTCCTAATGTTCTTTTGAATCGCATTCTTGGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATATAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGAAATGCACCACGCGACATATCAGAGAACACTAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATATCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAACGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCGGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATGGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAATACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTTCAGCTTAA | 2361 | 41.38 | MSRRVRFTLKKSTKEEEIYGVIAQNKSVPPNVLLNRILGVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRDISENTRDSYSMGDASEDEELSGSGTVVIRSPRGYQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINMEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPENTQNVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSSA | 786 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30675950 | 30692903 | - | ClG42_11g0197400.10 | Clacu11g1974 | 262851 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1974 | 786 | Coils | Coil | 134 | 161 | - | - | |
Clacu11g1974 | 786 | CDD | STKc_MST3_like | 107 | 380 | - | - | |
Clacu11g1974 | 786 | ProSitePatterns | Protein kinases ATP-binding region signature. | 114 | 137 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g1974 | 786 | Pfam | Protein kinase domain | 109 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1974 | 786 | SMART | serkin_6 | 108 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 548 | 580 | - | - | |
Clacu11g1974 | 786 | FunFam | serine/threonine-protein kinase dst1 isoform X1 | 105 | 394 | - | - | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 374 | 389 | - | - | |
Clacu11g1974 | 786 | SUPERFAMILY | Protein kinase-like (PK-like) | 106 | 392 | IPR011009 | - | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 737 | 762 | - | - | |
Clacu11g1974 | 786 | ProSiteProfiles | Protein kinase domain profile. | 108 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1974 | 786 | Gene3D | Transferase(Phosphotransferase) domain 1 | 105 | 395 | - | - | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 600 | 619 | - | - | |
Clacu11g1974 | 786 | PANTHER | STERILE20-LIKE KINASE, ISOFORM B-RELATED | 106 | 753 | IPR050629 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER) | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 594 | 631 | - | - | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 374 | 506 | - | - | |
Clacu11g1974 | 786 | MobiDBLite | consensus disorder prediction | 548 | 581 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0512 | Clacu-Chr5:4272361 | Clacu11g1974 | Clacu-Chr11:30675950 | 2.50E-54 | dispersed | |
Clacu05g0665 | Clacu-Chr5:5573719 | Clacu11g1974 | Clacu-Chr11:30675950 | 9.00E-35 | dispersed | |
Clacu10g0086 | Clacu-Chr10:1161444 | Clacu11g1974 | Clacu-Chr11:30675950 | 7.10E-60 | dispersed | |
Clacu11g1352 | Clacu-Chr11:23296682 | Clacu11g1974 | Clacu-Chr11:30675950 | 1.70E-70 | dispersed | |
Clacu11g1974 | Clacu-Chr11:30675950 | Clacu10g1289 | Clacu-Chr10:25826814 | 1.20E-28 | dispersed | |
Clacu11g1974 | Clacu-Chr11:30675950 | Clacu05g0965 | Clacu-Chr5:8561300 | 3.10E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73996 | PF00069 | Pkinase | 2.80E-68 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1974 | K08838 | - | csv:101214412 | 1252.27 |