Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1978 ATGACTGGGAAAGAGATTCTCCACAAGATGAAGGAAAAAGTTGGGCTATGTTCCTCGGATCCAGACTCAGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGTTTTCACTTGGTGGAAGGGAAATCAAATCATGCCATGGAAGATTATGTTGTTGCAGAGTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAATTCTATTCCTGATTATCTACAATCGCATTTATTTTCTAATATAATAAATGAGCCTGATTTCTGGACCGATCCAAAGAACGCAGTCAGGAAAGCATACGAGGAAACTGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACGGCCATATTGATAGACTGTAAGACACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTAGTAAAGGCAAGGCCAGACAATTATCAATCGATCATGAGCCGAGCTTTGAGAGAAAAAGCATTGAGGAAAGAGGTGGTTTTGTATCAAACTTTCCTGGAGATGTTCCCCGTGTTGATGGGCAGTTGGCAGTCGCAAGGGCGTTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCAGAGCCTTATGTGGTAATGGAGATGATAGATGACGAGACCGAATTTGTTATCTTGGCAAGTGATGGATTGTGGAAGGTTATGTCAAATGAAGAAGCGGTAGACTCGATCAGGCATATAAAAGACGCGCATGCAGCTGCCAAACACTTGACAGAGGAGGCCCTCAAGAGGAAGAGCAAAGATGATATCTCTTGTATAGTTGTGAGATTTCACTGA 852 42.49 MTGKEILHKMKEKVGLCSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFSNIINEPDFWTDPKNAVRKAYEETDAYILEKAVDFSHGGSTAVTAILIDCKTLVVGNVGDSRAVICSKGKARQLSIDHEPSFERKSIEERGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVMEMIDDETEFVILASDGLWKVMSNEEAVDSIRHIKDAHAAAKHLTEEALKRKSKDDISCIVVRFH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30743185 30745656 + ClG42_11g0197800.10 Clacu11g1978 262855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1978 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu11g1978 283 Gene3D - 30 283 IPR036457 -
Clacu11g1978 283 SUPERFAMILY PP2C-like 31 283 IPR036457 -
Clacu11g1978 283 SMART PP2C_4 31 280 IPR001932 -
Clacu11g1978 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Clacu11g1978 283 CDD PP2Cc 43 282 IPR001932 -
Clacu11g1978 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Clacu11g1978 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2600 Clacu-Chr1:36262009 Clacu11g1978 Clacu-Chr11:30743185 5.20E-84 dispersed
Clacu11g1011 Clacu-Chr11:12123125 Clacu11g1978 Clacu-Chr11:30743185 2.90E-25 dispersed
Clacu11g1155 Clacu-Chr11:16443496 Clacu11g1978 Clacu-Chr11:30743185 1.10E-17 dispersed
Clacu11g1596 Clacu-Chr11:27124233 Clacu11g1978 Clacu-Chr11:30743185 1.00E-86 dispersed
Clacu11g1978 Clacu-Chr11:30743185 Clacu07g0239 Clacu-Chr7:2805238 1.00E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1978 K17506 - csv:101215129 535.798