Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1979 ATGCTCACAAGATGCAGTGTAAGGGAAGCTGTACCACCAACCAGCCCTCCTGATCAAGTATGCAGATTTAATTCAGGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCCCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGGGGCATCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAGGAAAGCCATTGTAGGCAATTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA 771 50.45 MLTRCSVREAVPPTSPPDQVCRFNSGSYIFAPTISTSSINTTTIPTAIELPELAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30746181 30747992 - ClG42_11g0197900.10 Clacu11g1979 262856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1979 256 MobiDBLite consensus disorder prediction 212 227 - -
Clacu11g1979 256 FunFam Squamosa promoter-binding-like protein 14 123 193 - -
Clacu11g1979 256 MobiDBLite consensus disorder prediction 197 256 - -
Clacu11g1979 256 Gene3D - 122 193 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu11g1979 256 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 231 IPR044817 GO:0003677(InterPro)
Clacu11g1979 256 ProSiteProfiles Zinc finger SBP-type profile. 129 206 IPR004333 GO:0003677(InterPro)
Clacu11g1979 256 SUPERFAMILY SBT domain 130 209 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu11g1979 256 Pfam SBP domain 132 205 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1979 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0803 Clacu-Chr3:9044873 Clacu11g1979 Clacu-Chr11:30746181 1.20E-33 dispersed
Clacu11g1979 Clacu-Chr11:30746181 Clacu11g2095 Clacu-Chr11:31730563 5.60E-28 dispersed
Clacu06g0298 Clacu-Chr6:3657586 Clacu11g1979 Clacu-Chr11:30746181 6.80E-30 transposed
Clacu01g2393 Clacu-Chr1:34580628 Clacu11g1979 Clacu-Chr11:30746181 1.10E-30 wgd
Clacu11g1979 Clacu-Chr11:30746181 Clacu07g0237 Clacu-Chr7:2787371 4.10E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48698 PF03110 SBP 3.80E-31 No_clan Clacu TF