Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1984 ATGGCAACGGCATCAGATGTGGGTGTGAACGGAGAGAAGAGGGCTAAGATATCCCCTGATTTCTTGGAGAGCAAGGGGGTCCATGAAACTAAGGCTCTACTTTCAGAGCTGTGCCGCCATTTTTATGGGCTTGGATGGGTCTCTGGAACCGGCGGTAGTATCACCATCAAAGTCCATGATGATGCTATTCCCAAGCAGAATCAGCTCGTCGTCATGTCCCCCTCTGGTGTTCAGAAGGAGCGAATGGTACCAGAGGACATGTATGTGTTATCTCCTGATGGTTCTGTCTTATCTTCTCCTACTGTGAAGCCATACCCACACAAGCCTCCAAAATGTTCGGACTGTGGTCCCCTTTTTATGAAGGCATATCAGATGCGAGATGCTGGAGCTGTTATTCATAGTCATGGGATAGAATCATGCCTTGCAACAATGATCAATCCATCAGCAAAGGAATTTAGAATTACTCATATGGAAATGATCAAAGGAATCAAAGGGCATGGTTACTATGACGAACTTGTGATCCCAATAATAGAAAATACAGCTTATGAATACGAACTCACAGAATCTCTAGCTAAAGCAATTGAAGCCTACCCAAAAACAACTGCTGTGCTTGTTCGAAACCATGGCATTTATGTATGGGGGGATTCATGGATCCATGCAAAAACTCAGGCTGAATGTTACCACTATCTCTTTGATGCGGCCATCAAGCTTTATCAGTTGGGCCTAGACTGGTCTACTCCAAATCATGGTCCCATTAAGAAAGTCAAAGAAGTTGTAGTAGGTGGATGCAACAAAGAAGCATCTTCAAAGCATTGCATTGTTCTTGATATAGAAGGAACTACTACTCCAATCTCGTTTGTGACCGATGTTCTTTTTCCATATGCTCGCGACAATGTCCACAAACATTTGTCTCTAACATTTGACACTGCAGAGACTAAAGAGGATATTAAGTTGTTGCGTTCTCAGGTGCAAGATGATCTGGAAAAAGGTGTTGCTGGTGCCATGCCTATTCCTCTTGATGATTCTGCAAAAGAGGAGGTTATTGGAGCTATAGTTGCGAATGTCGAAGCCATGATAAAAGCCGACAGGAAAATTCCTGCTCTAAAACAGTTGCAAGGTCATATATGGCTAACTGGATTTGAGAACAATGAATTGAAAGGTGAAGTTTTTGAGGATGTACCAGGAGCTCTGGAAAGGTGGCACGACGCGGGCATAAAGGTATACATATATTCAAGCGGCAGTAGGTTAGCACAGAGGCTTCTATTTGGAAATACAAAATATGGGGATCTAAGAAAATATTTGTCTGGATATTTCGATACCGCAGTGGGGAACAAAAGAGAAATGCGCAGTTATGTTGAAATCAGAGAGTCTGTTGGAGTTGATAAGCCATCAGAAATTTTGTTTGTCACTGATGTTTTCCAGGAAGCTGTAGCTGCAAAAGCAGCAGGACTGGATGTGAATATATCCATACGACCCGGAAACGCTCCTCTTCCAGACAATCATGGGTTCAAAACCATTCAATCTTTCTCAGAAATATGA 1539 42.82 MATASDVGVNGEKRAKISPDFLESKGVHETKALLSELCRHFYGLGWVSGTGGSITIKVHDDAIPKQNQLVVMSPSGVQKERMVPEDMYVLSPDGSVLSSPTVKPYPHKPPKCSDCGPLFMKAYQMRDAGAVIHSHGIESCLATMINPSAKEFRITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWIHAKTQAECYHYLFDAAIKLYQLGLDWSTPNHGPIKKVKEVVVGGCNKEASSKHCIVLDIEGTTTPISFVTDVLFPYARDNVHKHLSLTFDTAETKEDIKLLRSQVQDDLEKGVAGAMPIPLDDSAKEEVIGAIVANVEAMIKADRKIPALKQLQGHIWLTGFENNELKGEVFEDVPGALERWHDAGIKVYIYSSGSRLAQRLLFGNTKYGDLRKYLSGYFDTAVGNKREMRSYVEIRESVGVDKPSEILFVTDVFQEAVAAKAAGLDVNISIRPGNAPLPDNHGFKTIQSFSEI 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30804168 30811145 + ClG42_11g0198400.10 Clacu11g1984 262861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1984 512 Pfam Class II Aldolase and Adducin N-terminal domain 34 233 IPR001303 -
Clacu11g1984 512 NCBIfam methylthioribulose 1-phosphate dehydratase 34 239 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Clacu11g1984 512 SFLD enolase-phosphatase 271 511 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Clacu11g1984 512 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 284 380 - -
Clacu11g1984 512 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 27 252 - -
Clacu11g1984 512 PANTHER ENOLASE-PHOSPHATASE E1 266 512 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Clacu11g1984 512 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 19 512 IPR027505 -
Clacu11g1984 512 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 380 512 - -
Clacu11g1984 512 SMART Aldolase_II_2 32 235 IPR001303 -
Clacu11g1984 512 Pfam haloacid dehalogenase-like hydrolase 272 483 - -
Clacu11g1984 512 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 19 243 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Clacu11g1984 512 Hamap Enolase-phosphatase E1 [ENOPH1]. 271 512 IPR027511 GO:0019509(InterPro)
Clacu11g1984 512 NCBIfam acireductone synthase 272 511 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Clacu11g1984 512 NCBIfam HAD-IA family hydrolase 340 483 IPR006439 -
Clacu11g1984 512 CDD HAD_EP 272 493 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Clacu11g1984 512 Gene3D - 379 512 IPR023214 -
Clacu11g1984 512 Gene3D - 27 252 IPR036409 -
Clacu11g1984 512 SUPERFAMILY AraD/HMP-PK domain-like 29 249 IPR036409 -
Clacu11g1984 512 SFLD C1.5.4: Enolase-phosphatase Like 271 511 - -
Clacu11g1984 512 Gene3D - 284 378 - -
Clacu11g1984 512 SUPERFAMILY HAD-like 271 512 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1984 K16054 - - csv:101205098 997.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1090 Clacu-Chr5:9752943 Clacu11g1984 Clacu-Chr11:30804168 6.00E-141 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57