Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1989 ATGTTTGCGTATTGGCTTATGTGCAGCTTTAAGTGGATAACAATGGAGGGATCATCTGATCACCTTAGGAACCAGGATGATATATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATACTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCGTGCTTTGTGATGTCTTCTTTCAACCATGTAACTTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTAAATAGTCAAATGGCAGAGGTTAAACCATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTCCGATCTGTTATGACCCCCATAAACGCATTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCTGCCCAAGTATCGTTAAATGAAGGGTCTGGAAAATGTAGAAAAAAAGATAGAAGACATATTGATGAAACAGAAGATAAGATGCAATCATTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACTAGCCCAGAAGAGGCTTCTGATGGCCCAAGTTCAAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGCGATATATTGCAGAGTGAATTTCTCAATGAACCTAAAGATGACCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCATTTTTGTGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTCACGCACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGTCAGGAATACTGATTCTGCTGGTTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTCGATGACTGTGAGAAGTCGAATCCAGACAATGAAAATCAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTGGCATATTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCCGTAGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTTGATCGCGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTGTGGGATGTCACGAGAAGTCAAGTGGTCACTGAAATGGGAGAACATGAGAGGCGCGTATGGTCCATTGACTTCTCATCAGCAGATCCTACAATTTTGGCTAGTGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAGTTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGATATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTGTTGATTCTCCTGTCCAGTCCTTCACGGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCATTTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCGAATCATGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2553 41.21 MFAYWLMCSFKWITMEGSSDHLRNQDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHTQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQMAEVKPSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQVSLNEGSGKCRKKDRRHIDETEDKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSDILQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGSRTDLVKDNHLPLNLPSMPPVRNTDSAGLGSRKRFRPGILTHDIEACGDNLDDCEKSNPDNENQQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSNHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30857550 30865143 - ClG42_11g0198900.10 Clacu11g1989 262866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1989 850 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Clacu11g1989 850 PRINTS G protein beta WD-40 repeat signature 733 747 IPR020472 -
Clacu11g1989 850 PRINTS G protein beta WD-40 repeat signature 606 620 IPR020472 -
Clacu11g1989 850 ProSitePatterns Trp-Asp (WD) repeats signature. 733 747 IPR019775 -
Clacu11g1989 850 PANTHER PROTEIN SPA1-RELATED 2 42 850 IPR044630 GO:0009640(InterPro)
Clacu11g1989 850 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 512 850 - -
Clacu11g1989 850 SUPERFAMILY WD40 repeat-like 538 847 IPR036322 GO:0005515(InterPro)
Clacu11g1989 850 SUPERFAMILY Protein kinase-like (PK-like) 47 312 IPR011009 -
Clacu11g1989 850 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 715 748 - -
Clacu11g1989 850 MobiDBLite consensus disorder prediction 381 403 - -
Clacu11g1989 850 Coils Coil 305 325 - -
Clacu11g1989 850 Gene3D - 515 850 IPR015943 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 665 704 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 809 848 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 755 794 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 622 662 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 534 569 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 580 619 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART WD40_4 708 746 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 SMART serkin_6 12 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1989 850 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 671 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 Gene3D Transferase(Phosphotransferase) domain 1 48 311 - -
Clacu11g1989 850 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 666 - -
Clacu11g1989 850 Pfam WD domain, G-beta repeat 626 662 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 Pfam WD domain, G-beta repeat 541 568 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 Pfam WD domain, G-beta repeat 711 746 IPR001680 GO:0005515(InterPro)
Clacu11g1989 850 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1989 850 ProSiteProfiles Trp-Asp (WD) repeats profile. 715 748 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1989 K26557 - - csv:101205812 1592.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0201 Clacu-Chr1:1967330 Clacu11g1989 Clacu-Chr11:30857550 1.20E-161 dispersed
Clacu02g1855 Clacu-Chr2:32038200 Clacu11g1989 Clacu-Chr11:30857550 1.40E-97 dispersed
Clacu09g1357 Clacu-Chr9:16432855 Clacu11g1989 Clacu-Chr11:30857550 1.10E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45