Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1996 ATGGAACAAAACTACACTGTACCTGAGGCATACTTAGAGTCTGAACAAGATGTCTCTCTCAAGCAAAACTGGAAATCTATCTCAACTCAGTCAACAGTCTCGGAAGAGGCGAGCGGTTGCTTTGATTGCAACATTTGCTTAGACTCAGCAGCCGACCCTGTTGTCACCCTCTGTGGTCACCTCTTTTGCTGGCCGTGCATTTACAAATGGCTTCATGTTCAAATCTCCAGCAATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATTAGTCCCTCCTCTTTGGTTCCCCTCTATGGCCGTGGCACATCATCGAACTCAGATTCTGAATCCAAGAAGTCTCACTTGGGTATTGCTGTACCTCGAAGACCACCACCATCAATGAACACACCGCCCCATTCCATTGCAACCTCTTCATTGCATCCTAGCCAGGAGCTTCATCCAAATTATATCCGCTCGCCCTCACACCCAATCTATCACCAACAATATTTCCCCCAAGCCTACGGTGACTTTGCCTCATATGCACCGTCTTATCTCGGTAATGCCGTGATAACAAGCCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTTACTAGAATTTTTGGTAGCGTGGATGGGAACTTATTGCCATACCCACCATACAACAACTCGATCCCAGGACATGCCAATACCAGAATGAGAAGACAGGAAATGCAGCTTGATAAAAATCAACTTCTTTCATTGGAGTCGGGTGGCGAGAAGGTTGATAGCCATTGCATGCTCAGCTTTACTTCGTTTCTTGCACTTGATTCTCTCTCTGTTTCTGCTTGGAAGGGGAAATCAAGGTGTGTGAAGATGAGGGGTCCTTTAGGGGCAGTGATTGGGAGGTACCCTTCAAGTGATGGAAATGCCCAAATGGGTGGAATCATTAGGCATAATAGAAAATGTAGAGATATTGTATTTCTTGTGATCTTTATAGCTTTCTGGGTGGGGATGATTGTTAACTCAAGCTTTGGATTTAACCAAGGAAACCCATTAAGGCTTACATATGGACTAGACTACAAAGGAAATGTCTGTGGTGACAAGCATGCTAATCCTGGCCTTCGTGAATTGGAGCTTAAATATTGGTTGAATCCTAATCAGGTTTATCAAAGTGGTCTGAAGGACAGTCAATTTAAGTTGGCGGATGCCCGGAGTATATGCTTGATGGATTGCCCGACTCCTTCAGAAGATTCTCTAAACTGGGTTTGCGATTATCCAGAAGGTGAAATACGCCTCTCAATGGATGATTGGATAGACAGGAACTACGATTACTTTGAGTTCCTTACGCCTGAGATGAGAAACAGTTCTGTTAACCTTCAGGGTCCTTGTTACCCTGTCATTTTTCCTAGTGTAAATGTTTATTGGAGCTGCCAGTTCCTTGCCCGCCCCTCAAATGTATCATTAACACATTGGAAGCAGATGGGTGGAATGAACATTGATGCAGATTTGATCATTGATAAATCTATTCATAAGTCAACCAACTCTCGATCATCTGTCTTAAAGAGATACATGGCGGATATTGGGAAGTCATGGCCGGTATTGATTGTTTGCGGAGGAATTTTACCTCTATTTTTGGCAGTGATTTGGTTGCTAATGATTCGGCATTTTGTTGCTGCGATGCCGTGGGTAACAGTTGTCCTATTCAACATTCTCGTCGTATCGGTCACAATGTTTTATTACCTCAAAGCTGGATGGATAGGAAACGATGCTATAACTCCCATCATTGGTGATCATGATCCCTATGTCCACATATTTGGAAGGGAGCTCAATCATATGCGTGCTGCTGCTGTTCTAATGACTTTTGTTATGGCTGTCTCCGTTCTTACATCAATTGCCATCATCCGCCGAATCATAATGGCAACATCTGTTGCTGCAAAGGTGATTGGAGAAGTTCAAGCACTCATAATCTTTCCAGTCATACCTTATGCCATCCTTGCAATTTTTTATATGTTATGGTTATCAGCTGCGCTTCATCTCTTCAGCTCTGGTCAGGTTGTCCAGAATAATTGCAACTCAAACTGCTGTGCCTACGATCTTGCTTCAAAACGAGTGAACTGCGACCGTTGCTGTGGTTATAGCATCCGTTATACTCCTCATATCGACATTGCCATCTTTTTCCACCTATTTGGTTGTTATTGGGCTACTCAATTTTTTGTAGCATGCTCTTCAACAGTTATTGCAGGTTCAGTAGCCTCCTATTATTGGGCTCGTGGTGAAACTTCGCCCGAAATTCCATTTCTTCCTGTTTTCTCCTCGATGAAACGGTTAGCAAGATATAATCTCGGGTCCATGGCTCTTGGTTCCTTGACTGTGTCCTTCATGGAATCAATTCGTTTCATACTTGAATCTATTCGTCGCAAATTGAAAGTTGCAAGTACAGCACCAGATAGTCGGATTGGCCGAGCAGTGCATAATACGTCTCGGTTTTGCCTGAGATGTATAGAGTGGATCATCAAATCTGTTAACCGCAATGCGTACATAATGATTGCGATAACGGGCAAGAGCTTTTGCAAGGCGTCTGCTATTGCGACAGAGTTAATAATTAACAACATCCTTCGAATCGGAAGAGTGAATGTGATTGGAGATGTCATTCTGTTCCTTGGGAAACTGTGTGTCAGCCTCTCAAGTGCTCTTTTTGCTTTCCTCATGTTGGATACCCACAAATACAGATCTGCTCATAACAAGATTTCTTCCCCATTGTTTCCAGTCCTGGTTTGCTGGGGGCTAGGCTATGTGGTTGCCACACTTTTCTTTGGAGTGGTCGAGATGTCCATTGATACAATAATTCTTTCCTTCTGTCAAGATTCTGAAGAACATCAAGGCACAGCTCAGTATGCCCCTCCTCTTCTCATGGAGACTCTCAATGATCAAAATGAGATGCAAAGACTTACACAAGGACCTCCCAGTTCATAA 2952 43.63 MEQNYTVPEAYLESEQDVSLKQNWKSISTQSTVSEEASGCFDCNICLDSAADPVVTLCGHLFCWPCIYKWLHVQISSNEPENTQNCPVCKASISPSSLVPLYGRGTSSNSDSESKKSHLGIAVPRRPPPSMNTPPHSIATSSLHPSQELHPNYIRSPSHPIYHQQYFPQAYGDFASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSIPGHANTRMRRQEMQLDKNQLLSLESGGEKVDSHCMLSFTSFLALDSLSVSAWKGKSRCVKMRGPLGAVIGRYPSSDGNAQMGGIIRHNRKCRDIVFLVIFIAFWVGMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHANPGLRELELKYWLNPNQVYQSGLKDSQFKLADARSICLMDCPTPSEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSVNLQGPCYPVIFPSVNVYWSCQFLARPSNVSLTHWKQMGGMNIDADLIIDKSIHKSTNSRSSVLKRYMADIGKSWPVLIVCGGILPLFLAVIWLLMIRHFVAAMPWVTVVLFNILVVSVTMFYYLKAGWIGNDAITPIIGDHDPYVHIFGRELNHMRAAAVLMTFVMAVSVLTSIAIIRRIIMATSVAAKVIGEVQALIIFPVIPYAILAIFYMLWLSAALHLFSSGQVVQNNCNSNCCAYDLASKRVNCDRCCGYSIRYTPHIDIAIFFHLFGCYWATQFFVACSSTVIAGSVASYYWARGETSPEIPFLPVFSSMKRLARYNLGSMALGSLTVSFMESIRFILESIRRKLKVASTAPDSRIGRAVHNTSRFCLRCIEWIIKSVNRNAYIMIAITGKSFCKASAIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSALFAFLMLDTHKYRSAHNKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQGPPSS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30924650 30936172 + ClG42_11g0199600.10 Clacu11g1996 262873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1996 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 104 IPR013083 -
Clacu11g1996 983 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Clacu11g1996 983 CDD RING-HC_AtRMA-like 41 91 - -
Clacu11g1996 983 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872(InterPro)
Clacu11g1996 983 SMART ring_2 43 89 IPR001841 -
Clacu11g1996 983 Pfam Plasma-membrane choline transporter 611 950 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu11g1996 983 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Clacu11g1996 983 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 305 972 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu11g1996 983 MobiDBLite consensus disorder prediction 104 144 - -
Clacu11g1996 983 SUPERFAMILY RING/U-box 23 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1996 K15377 - - csv:101206929 1380.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0283 Clacu-Chr7:3178350 Clacu11g1996 Clacu-Chr11:30924650 1.40E-37 dispersed
Clacu08g1698 Clacu-Chr8:26573550 Clacu11g1996 Clacu-Chr11:30924650 8.00E-26 dispersed
Clacu10g1745 Clacu-Chr10:30980823 Clacu11g1996 Clacu-Chr11:30924650 3.80E-21 dispersed
Clacu05g1409 Clacu-Chr5:16404614 Clacu11g1996 Clacu-Chr11:30924650 1.90E-07 transposed
Clacu01g2379 Clacu-Chr1:34476209 Clacu11g1996 Clacu-Chr11:30924650 1.30E-17 wgd
Clacu11g1996 Clacu-Chr11:30924650 Clacu03g0604 Clacu-Chr3:6240899 1.50E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g245 . Blo03g01543 . Bda09g00501 . Bpe08g01028 . . . . Cma01g01205 . Car01g01029 Car09g00786 Sed04g3115 Cpe06g00696 Cpe02g00706 Bhi09g03404 Tan01g4406 Cmetu07g1213 . Hepe01g1378 Mch11g1078 . Cla11g01770 Cam11g1835 Cec11g1856 Cco11g1864 Clacu11g1996 Cmu11g1805 Cre11g2214 Cone6ag0138 Cone9ag0163 . . Lsi04g01327 Csa04g02352 . . . . . . . . . . . Cmo01g01257 Cmo09g00862 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006813 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 34