Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2003 ATGGCCGACCGTTTCTTTCCAAACCAAATGCCACGCTTCCTCGCCGAAGCACCGGCGGACAAACTCGCAGCGTCCGATTCCGATTCCGATTCCGATTCTGCCAACCACACACTCATTCCCACAGAGCTTCTTTCGCTTCCCGATGCTGCACTTTTCAATCGCCTTAGACAGACAGCTCTCGACCTCAAAGAAACGGTCCTGAGAGAGACGTGGACGTTGAGTGGAAGGCACCCGCAGGATTATACTTTGTATACTGGAGCATTAGGGACAGCTTTCCTGGCTTTGAAATCCTTCCTAGTTTCTAAGAATGTGAATGATCTCAAGTTGTGCTCTGAGATTGTCACTGCCTGTGAGTCTGTATCTAGAGATTCGAGGCGCGTGTCATTTATCTGTGGCCGAGCTGGAGTTTGTGCTCTTGGAGCAGTTGCCGCAAAGCTCGCTAATGATGGAAGGCTCGTCGACCATTACTTGGAAAAGTTTAAAGATATCAAACTACCTAGTGATTTGCCAAATGAACTCCTATATGGCAGAGCAGGGTTCCTATGGGCCTGTTTGTTCCTAAACAAGCACATTGGTCGGAACACGATATCTAACGCTATTATGAGATCAGTGGTGGACGAAGTCATTGAGGCTGGTAGGGGATTGGGTAAGAAGAGCAAATCTCCATTGATGTATGAATGGCATGGGAAGAAGTACTGGGGTGCTGCCCATGGACTGGCTGGAATTATGCATGTCTTGATGAACATGGAACTAAAGCCAGATGAGGTTGAGGATGTCAAGAATACGCTACGTTACATGATTAAAAATCGATTTCCAAGTGGCAATTATCCTTCAAGTGAAGGAAAAGAATCTGACCGTCTGGTCCACTGGTGCCATGGGGCTCCTGGGGTTGCACTTACCCTCATAAAAGCAGCTGAGGTTTTTGGAGACGAAGAATTTCTGCAAGCTGCGGTAGATGCTGGGGAAGTCGTCTGGAACCGTGGTCTACTCAAACGGGTTGGCATCTGCCATGGAATTAGCGGTAACACGTATGTGTTTCTTTCACTTTACCAGTTGACGGGTGATCTCATATACTTATACAGAGCCAAAGCATTTGCATGCTTTCTGCATCAGAATGCACAAAAGCTAATATCAGAAGGGAAGATGCATTCTGGTGATTGCCCTTATTCCTTGTTTGAAGGAATTGGGGGAATGGCATATCTCTTTTTTGACATGATTGAGCCATATGCAGCAAAGTTCCCATCTTATGAACTCTAA 1257 46.54 MADRFFPNQMPRFLAEAPADKLAASDSDSDSDSANHTLIPTELLSLPDAALFNRLRQTALDLKETVLRETWTLSGRHPQDYTLYTGALGTAFLALKSFLVSKNVNDLKLCSEIVTACESVSRDSRRVSFICGRAGVCALGAVAAKLANDGRLVDHYLEKFKDIKLPSDLPNELLYGRAGFLWACLFLNKHIGRNTISNAIMRSVVDEVIEAGRGLGKKSKSPLMYEWHGKKYWGAAHGLAGIMHVLMNMELKPDEVEDVKNTLRYMIKNRFPSGNYPSSEGKESDRLVHWCHGAPGVALTLIKAAEVFGDEEFLQAAVDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYQLTGDLIYLYRAKAFACFLHQNAQKLISEGKMHSGDCPYSLFEGIGGMAYLFFDMIEPYAAKFPSYEL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30978341 30980937 + ClG42_11g0200300.10 Clacu11g2003 262880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2003 418 CDD euk_LANCL 83 414 - -
Clacu11g2003 418 PRINTS LanC-like protein superfamily signature 333 346 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 PRINTS LanC-like protein superfamily signature 388 405 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 PRINTS LanC-like protein superfamily signature 171 186 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 PRINTS LanC-like protein superfamily signature 232 248 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 PRINTS LanC-like protein superfamily signature 287 307 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 PRINTS LanC-like protein superfamily signature 80 98 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 PRINTS Eukaryotic LanC-like protein family signature 221 233 IPR020464 -
Clacu11g2003 418 PRINTS Eukaryotic LanC-like protein family signature 349 367 IPR020464 -
Clacu11g2003 418 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Clacu11g2003 418 PRINTS Eukaryotic LanC-like protein family signature 304 325 IPR020464 -
Clacu11g2003 418 PRINTS Eukaryotic LanC-like protein family signature 267 282 IPR020464 -
Clacu11g2003 418 PANTHER LANC-LIKE PROTEIN 4 417 - GO:0005886(PANTHER)
Clacu11g2003 418 Pfam Lanthionine synthetase C-like protein 78 418 IPR007822 GO:0031179(InterPro)
Clacu11g2003 418 FunFam LanC-like protein 2 1 418 - -
Clacu11g2003 418 SUPERFAMILY LanC-like 76 418 - -
Clacu11g2003 418 Gene3D - 1 418 IPR012341 GO:0005975(InterPro)
Clacu11g2003 418 SMART LANC_like_2 77 418 IPR007822 GO:0031179(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2003 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1735 Clacu-Chr7:32050734 Clacu11g2003 Clacu-Chr11:30978341 1.40E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49