Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2025 ATGGTGAAAATGAAGTTTGTTTCCATGTCTATGGTTATGTCTGTCGTCTTGTTCATGTGTATTGGATCTTACGCCTCTTTCACTCCCATTGATAACTATTTGATATCGTGTGGTTCTACACAAAACATCACCTTCCAAGGGAGAACGTTTGTTCCTGATTCTGGACATTCATTGCTCTCCAATGATGGTGAAAGCTCTGTTGTTGTTAGTTCAAAAGGCACTACTGCTCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACGAGCATTGCTTCGTATAAATTCGAAATCAAGAAAGAAGGCCGGCATTGGGTTCGATTGTATTTTTATCCTATTCCAAAGTCAGAGAAGAATCTTGCATCTGCATCAATTACTGTTGTTACTGAGAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTCAGATTCCTTGACCCTTACTTTCATTCCGTCCAATGGTTCTGTTTCATTTGTTAATGCGATTGAAGTTGTCTCGGTGCCTGATGAGCTGATACCTGACCAAGCATTGGCTTTGAATCCATCTGCTCCTTTTAGCGGTATCTCGGAACTTGCTTTTGAAACTGTTTACCGGCTGAATATGGGGGGTCCTTTACTCACTTCACAAAATGATACGCTTGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAACAGTTCTGCAGTGAATGTCTCTGCCAACCCCAGGAGCATAAAATATCATGCCGGTGTGACACCAGAAACTGCACCAAATTGGGTTTATGCGACTGCCGATGCCATGGGAGACCCAAATGTACCGAACGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAATTTTCAATACTTTGTCAGAGTGCACTTTTGTGATATAATGAGCAAGGCTCTCAATAATCTGGTTTTCAATCTTTACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCATTGTTAACCGGTGACTTAGGTGTGCCTTATTACAAAGACTTCATTTCCAACTCAGCAGATTCGACTACTTTGACCGTTAGTGTCGGTCCAGATACAATGGCAGACATCACCAATGCAACCATGAATGGATTGGAGATTATGAAGATAAGCAACCAAGCTGGGAGCTTGGATGGAACTTCATCTGTTGAAAGTCTTTTCCCAGATGCGCCTTCAAAGAAGAACAATATAGCAATCATTGTTGGTTGTGTCTTGGGAGCTGTAGTTGGCCTTGCTTTGCTCATCTTGTGTTATTGCTGTTACATAGGACGCAAGTCAAAGACTACTCAACCACCACACCCTTGGCTGCCTTTGCCCTTATATGGGAACTCTCAAACCATTACAAAAGTGTCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGTCTCGGCAGATTCTTCACATTTCAGGAAATTCTTGATGCTACCAACAAATTTGACGAAAATCTGCTCCTTGGAGTTGGTGGTTTTGGTAGAGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAACCCCAGATCAGAACAAGGTCTTGCCGAATTTCGAACTGAAATTGAAATGTTATCAAAGCTCCGACATCGTCACCTAGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTCTATGAGTACATGGCAAATGGACCTCTCAGGAGTCACTTGTATGGAACAGATCTACCACCGTTGTCGTGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGGGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATTATACACCGAGATGTTAAAACCACAAACATTCTCTTGGACGAGAATTTTGTTGCCAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTAAGTACGGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGATGTATATTCATTCGGGGTTGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCTGTTCTGCCCCGAGAACAAGTCAATATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATTATGGACCCAAATCTGGTAGGTAAAGTTAATCCAGCATCACTTAAGAAGTTTGGTGAAACAGCTGAGAAGTGTCTGGCCGAGTATGGGGTTGACAGGCCATCTATGGGAGACGTCCTGTGGAACCTGGAATATGCTCTTCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAATCACATCCCTACCATCCAACTGACCCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCTGGCACCGACGATGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCACAGCTCGTAAATCCTCGTGGGAGATGA 2529 43.02 MVKMKFVSMSMVMSVVLFMCIGSYASFTPIDNYLISCGSTQNITFQGRTFVPDSGHSLLSNDGESSVVVSSKGTTAPSPIYQSARVFTSIASYKFEIKKEGRHWVRLYFYPIPKSEKNLASASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVVSVPDELIPDQALALNPSAPFSGISELAFETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSANPRSIKYHAGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKALNNLVFNLYINSDNALGSFDLSLLTGDLGVPYYKDFISNSADSTTLTVSVGPDTMADITNATMNGLEIMKISNQAGSLDGTSSVESLFPDAPSKKNNIAIIVGCVLGAVVGLALLILCYCCYIGRKSKTTQPPHPWLPLPLYGNSQTITKVSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31231577 31234105 + ClG42_11g0202500.10 Clacu11g2025 262902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2025 842 SUPERFAMILY Protein kinase-like (PK-like) 478 772 IPR011009 -
Clacu11g2025 842 Pfam Malectin-like domain 35 385 IPR024788 -
Clacu11g2025 842 SMART serkin_6 501 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2025 842 PANTHER OS07G0166700 PROTEIN 489 778 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Clacu11g2025 842 CDD STKc_IRAK 507 772 - -
Clacu11g2025 842 Gene3D Phosphorylase Kinase; domain 1 459 576 - -
Clacu11g2025 842 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Clacu11g2025 842 Pfam Protein tyrosine and serine/threonine kinase 507 698 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g2025 842 Gene3D - 32 182 - -
Clacu11g2025 842 Gene3D - 206 387 - -
Clacu11g2025 842 ProSiteProfiles Protein kinase domain profile. 501 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2025 842 MobiDBLite consensus disorder prediction 806 827 - -
Clacu11g2025 842 FunFam Receptor-like protein kinase FERONIA 577 793 - -
Clacu11g2025 842 FunFam receptor-like protein kinase FERONIA 463 576 - -
Clacu11g2025 842 FunFam Putative receptor-like protein kinase 32 183 - -
Clacu11g2025 842 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524(InterPro)
Clacu11g2025 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g2025 842 FunFam Receptor-like protein kinase FERONIA 207 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2126 Clacu-Chr1:32899919 Clacu11g2025 Clacu-Chr11:31231577 1.10E-63 dispersed
Clacu02g1719 Clacu-Chr2:30657171 Clacu11g2025 Clacu-Chr11:31231577 1.30E-177 dispersed
Clacu05g0980 Clacu-Chr5:8722149 Clacu11g2025 Clacu-Chr11:31231577 5.10E-208 dispersed
Clacu09g0229 Clacu-Chr9:2110013 Clacu11g2025 Clacu-Chr11:31231577 2.40E-224 dispersed
Clacu11g0635 Clacu-Chr11:6037277 Clacu11g2025 Clacu-Chr11:31231577 5.10E-123 dispersed
Clacu11g1513 Clacu-Chr11:26300242 Clacu11g2025 Clacu-Chr11:31231577 2.90E-162 dispersed
Clacu11g2025 Clacu-Chr11:31231577 Clacu10g1148 Clacu-Chr10:24024521 2.60E-66 dispersed
Clacu01g1783 Clacu-Chr1:30040978 Clacu11g2025 Clacu-Chr11:31231577 1.50E-14 transposed
Clacu01g2599 Clacu-Chr1:36259009 Clacu11g2025 Clacu-Chr11:31231577 1.70E-193 transposed
Clacu02g1402 Clacu-Chr2:27276593 Clacu11g2025 Clacu-Chr11:31231577 1.20E-180 transposed
Clacu02g2117 Clacu-Chr2:34298474 Clacu11g2025 Clacu-Chr11:31231577 4.40E-239 transposed
Clacu11g2025 Clacu-Chr11:31231577 Clacu08g1096 Clacu-Chr8:20949112 2.50E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73997 PF12819 Malectin_like 2.40E-39 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2025 - - - 0.0