Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2027 ATGATGGATAGAACCCCTGGTTTAGTTTTGAAGCGTTCCTTGCGGAAGAAAGCTACTTCGCGAAATTATGACGAGGATTTAATGGATGAGTTTGTCGAGAAGCATTTAGGGGGTGTTTCCAAGAAGAAGAAGAGCAAAACGGCAGAGGATCTAGAGAAAGAGACTGAAATTGAGGCCATGATAGCACTATCGGTTGGATTCCCAATCGATGCCCTGCTTGAGGAGGAAATTAAAGCGGGGGTGGTGAAGAAATTGGGTGGGAAAGAGCAGAATGATTACATTGTTGTTAGAAATCATATCCTCGCTAGGTGGCGGGGTAATGTACGAATGTGGCTTTCGAAAGGGCAGATTAAAGAAACTGTGAGCAATGAGTATGAGCATTTGATTAGTGCAGCATATGATTTCCTTCTGTACAATGGATATATAAACTTTGGTGTTTCACCAAACTTTACATCTCAAGTGTCAGAGGAGGGATCTGAAGGAACTGTGATTATTATCGGTGCAGGCCTTGCCGGGTTAGCTGCAGCTCGGCAGCTATTATCATTTGGTTTTAAGGTTATTGTTTTAGAAGGTAGGAATCGACCTGGTGGAAGAGTTTATACACAAAAGATGGGGCAAGAGGGCAAATTTGCTGCTGTAGATCTTGGTGGCAGTGTCATTACTGGTATCCATGCTAATCCTCTCGGAGTTCTAGCTAGACAACTTTCCATTCCACTTCATAAGGTTAGAGATAATTGTCCATTGTATAAACCTGATGGAACACTGATCGGAAAGGATATTGATGCCAAGATTGAGTTTATTTTTAATAAATTGCTAGACAAAGTGACTGAACTGAGAAAGATTATGGGAGGATTGGCAAATAACATTTCTCTTGGAACCGTTCTAGAAAAACTCAGGCAATTGTATGCTGTGGCTCGGAGTAAGGATGAAAGACAACTTCTTGATTGGCATATAGCAAACTTGGAATACGCAAATGCAGGATGTGTTTCAAATTTGTCTGCTGTGCATTGGGATCAAGATGATCCTTATGAAATGGGCGGCGACCATTGCTTCCTAGCAGGAGGTAATGGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCAATATTTTATGGGCAGGTTGTTGACACTATTAAATATGGAAGTGAAGGAGTAGAAGTAATAGCTGGAGATCAAGTGTTTCAAGCTGATATGGTCCTGTGCACGGTTCCACTTGGGGTTCTGAAGCGAAAGCATATCAGATTTGAACCAGAGTTACCTAAAAGGAAACTGGCAGCAATTGAGCGACTGGGTTTTGGATTATTGAATAAAGTTGCAATGACTTTTCCTCATGTTTTCTGGGGGGAAGACCTAGATACATTTGGATGTCTCAGAGAGCATTGCCATCAGCGAGGGGAGTTCTTTTTGTTTTATGGTTACCATACTGTTTCCGGAGGTGCAGTTCTTATAGCTCTAGTTGCTGGAGAAGCTGCTGAAGCATTTGAATGCACGGATCCAACTGTGTTGCTCCACCGGGTTCTTGGAATTCTCAGAGGCATATTCAGCCCCAAGGGGATTGACGTACCAAATCCAATACAGTCAATATGCACAAGATGGGGCAGGGATCCATTTTCTTACGGCTCATACTCTCATGTTCGAGTGGGTTCCACTGGCAGCGATTACGACATTCTTGCAGAGAGTGTGTGGAACAGATTATTCTTTGCTGGTGAGGCCACAACTAAGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGTGGGCTAAGAGAAGCTTCATGTATTTACCAAGCTACTCGGGGACGATCAAACAATTCAAGGAAGTACATGCCAAAAAGTCTCAGACATGATATTCTGGCGGATCTTTTCAGGAAACCTGACATTGAAATTGGAAATCTGTCCTTTATTTTCAATTCCTTGGTAGATGATGAAAAATCAATGGGGGTCATGAAAATCACATTCAGAGGCAAGGGAGAAAGTTCTAATGACGAAGAATTGGCAGACAATTGTGAAGACCCCTCACAACAACAGCTGCTGCTTTACACAATTGTATCCCGTGAACAGGCACGTGCGCTGCAACTTGCGATTGAAGAGGATGAAAGTAGACTGCCATATCTAGTGAAAGATTTTGGCTTAAAGCTGATGGGACCCAGTGCCTTGGCTAATATCGTAAAGTAA 2175 42.71 MMDRTPGLVLKRSLRKKATSRNYDEDLMDEFVEKHLGGVSKKKKSKTAEDLEKETEIEAMIALSVGFPIDALLEEEIKAGVVKKLGGKEQNDYIVVRNHILARWRGNVRMWLSKGQIKETVSNEYEHLISAAYDFLLYNGYINFGVSPNFTSQVSEEGSEGTVIIIGAGLAGLAAARQLLSFGFKVIVLEGRNRPGGRVYTQKMGQEGKFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGTLIGKDIDAKIEFIFNKLLDKVTELRKIMGGLANNISLGTVLEKLRQLYAVARSKDERQLLDWHIANLEYANAGCVSNLSAVHWDQDDPYEMGGDHCFLAGGNGRLIKALCEGVPIFYGQVVDTIKYGSEGVEVIAGDQVFQADMVLCTVPLGVLKRKHIRFEPELPKRKLAAIERLGFGLLNKVAMTFPHVFWGEDLDTFGCLREHCHQRGEFFLFYGYHTVSGGAVLIALVAGEAAEAFECTDPTVLLHRVLGILRGIFSPKGIDVPNPIQSICTRWGRDPFSYGSYSHVRVGSTGSDYDILAESVWNRLFFAGEATTKQYPATMHGAFLSGLREASCIYQATRGRSNNSRKYMPKSLRHDILADLFRKPDIEIGNLSFIFNSLVDDEKSMGVMKITFRGKGESSNDEELADNCEDPSQQQLLLYTIVSREQARALQLAIEEDESRLPYLVKDFGLKLMGPSALANIVK 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31241307 31244156 + ClG42_11g0202700.10 Clacu11g2027 262904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2027 724 Gene3D - 163 592 IPR036188 -
Clacu11g2027 724 ProSiteProfiles SWIRM domain profile. 52 153 IPR007526 GO:0005515(InterPro)
Clacu11g2027 724 Pfam SWIRM domain 74 144 IPR007526 GO:0005515(InterPro)
Clacu11g2027 724 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 543 - -
Clacu11g2027 724 Gene3D - 58 156 IPR036388 -
Clacu11g2027 724 Gene3D - 245 550 - -
Clacu11g2027 724 Pfam Flavin containing amine oxidoreductase 170 594 IPR002937 GO:0016491(InterPro)
Clacu11g2027 724 PANTHER FLAVIN MONOAMINE OXIDASE 66 596 IPR050281 GO:0016491(PANTHER)
Clacu11g2027 724 SUPERFAMILY FAD/NAD(P)-binding domain 162 597 IPR036188 -
Clacu11g2027 724 FunFam Lysine-specific histone demethylase 1A 57 156 - -
Clacu11g2027 724 SUPERFAMILY Homeodomain-like 54 153 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2027 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1081 Clacu-Chr7:25370829 Clacu11g2027 Clacu-Chr11:31241307 6.00E-47 dispersed
Clacu08g0923 Clacu-Chr8:19387039 Clacu11g2027 Clacu-Chr11:31241307 2.90E-204 dispersed
Clacu08g1610 Clacu-Chr8:25893854 Clacu11g2027 Clacu-Chr11:31241307 4.80E-85 dispersed
Clacu11g2027 Clacu-Chr11:31241307 Clacu11g1846 Clacu-Chr11:29584920 4.10E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48701 PF01593 Amino_oxidase 1.60E-90 CL0063 Clacu TR