Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g2033 | ATGGAGGTTTGTTTCTCAACGGAATTGCCCTCTTTCGATTTGCGGATTGCTGTTGCAGAAGAGGCTGGTGTTTTTTGGGTTGAGAGTGTGGTGAATTTGGGGTGGAATTCTGTGAAATTTTGGAATTTGAAGTACTGGGGTTTTGGCAAAATGATGTTATCCGCGTCGCCTTCGGCAATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCGCCGGTGAAGCGGGCTTTACCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAATGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCGCCTTACATGGTAGCTTCAGAAAATGATAATAGAGATCAAGTGTATGGCTCGAATGGTGCAAATATTCAAGGGTCTAACTGGGAGGACAATATCAGTTATTTTCTTCATAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTAGGAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACAGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGCACAGCTCGGTTATTTGAATGAGCCTTCGGTTATTCACAGTCTCCAGAGAAGATTTTCTCGGGATAAAATTTATAGTAATGCTGGGTCAGTTTTGATTGCAGTCAATCCCTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGACAGAGAGTCATGAATGACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCGATGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCAAAAGCTGCAGTTCAATACCTGGCTGCTCTTGGTGGCGGCAGTGGCATAGATGATAGAATCCCACAGGCGAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCTAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTTTGTGCTGGAGCATCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCTAGTGAGTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTTGTGGAAGCCCTAGATACACTTCAATTCACAAAAGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCGATCCACAAAGTGCAATCAGGCAACGGCAGCATTGCTAAAAAATTGACATTACGCCAGGCAACCGATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAACGGAGCATTCTGGAAGATCCATAAATATTCTTGACTTCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAGTTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATGAGGCACCTGTTCAAACTTCAGCAGGAGGACTATGAATTTAATGGGGTCGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTTACATTTGCTAATAAACTAAAGCAACACTTTAAGTCTCAACCTTGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTATTCGCCATTATGCTGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCCGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAACTGATTAACCATTCCCAGAAACCAACAGTTTCAATGTGCTCTACAGAAGTAGTAGAATCCCCCGAGCCAGGTGTTGGTACCAAGTACAAGCTTCTACTATTTGACCTATTTCATAAATTGGAGTACACCAGCCATCATTTCATTTGTTGCATAAGGCCGAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAGCTTCGGTACTGTGGAATTTTGGAAGTTGTGAGAATTTCAAGATCTGGATATCCTACCAGAATGATGCATCACGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGCATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTACAACAATTTAATGTCCACCCCGAGATGTACCACGTTGGTTATACCAAACTATTTTTCCGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTTATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTACCGTTAAGGTGAAGAGGTTCTCATTCGTTGTGTATGCTTTTAGCGTTCCTAAGAAGGCTTACGAACTCCAGGGAATCATACGTTTACAATCTGTCATACGTGGTTCATTGGCTCGAAAGCATTTTCGGAGCATGCGTGATTCAAAGAGGGATTTTCCTGAAAACAAGAAATCTAAACTGACAACAGGCGGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCTTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATGCTGCAATGCGGGAGCAAGTAAAACAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAACCTGTCCACCAGGAAGAATTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGATACAACGTCAATGGGATCCCGAACACCTGGTGGTACCACACCTATAAAGGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGAAATGAATGGTACTTTAGTGGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAACTGCATTTGACGATGATGCCAAAGCTTTAATTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCATGGAAAAAAGAGTACAAGGCTAGATTAAGGGAAACAAAAGCTAAGTTCAGCTTTGTGAATGAATGGAGAGCTCTTGAAAAGAAGGGGGAGAAAACTGTTGAGTTGTCTTCTGACAACATGTGGGTGTTGAAGCTCAACCTGATAAAGCCGAGAAATGTGTCGCCCGTTCGTGGGATGGAAGGAGAGTGTTCAGAAGATTGTTTGTCATTAGCTCCTTTTCTGAAGGAAATACCTCAAGAGCTCATCTTGGCAGATCAGAGAGTCCAGCAGGGTCCTATGGATAACCAGCTGGAAATTGACTAG | 3960 | 42.17 | MEVCFSTELPSFDLRIAVAEEAGVFWVESVVNLGWNSVKFWNLKYWGFGKMMLSASPSAIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVKRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNRDQVYGSNGANIQGSNWEDNISYFLHKKLRVWCQLPTGQWELGTIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLAQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNDPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKAAVQYLAALGGGSGIDDRIPQANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGASSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHILVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSIHKVQSGNGSIAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRTEHSGRSINILDFYGFESFKKNGFEQFCINYANERLQQHFMRHLFKLQQEDYEFNGVDGTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQPCFKGERGRAFGIRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKLINHSQKPTVSMCSTEVVESPEPGVGTKYKLLLFDLFHKLEYTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMMHHEFAGRYGFLLKETGASRDPLSISIAVLQQFNVHPEMYHVGYTKLFFRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTVKVKRFSFVVYAFSVPKKAYELQGIIRLQSVIRGSLARKHFRSMRDSKRDFPENKKSKLTTGGRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENAAMREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVTCPPGRIDAGNSPPHYYDSEDTTSMGSRTPGGTTPIKASGISEVGAGREMNGTLVAVNNLVKEFEQRRTAFDDDAKALIEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKFSFVNEWRALEKKGEKTVELSSDNMWVLKLNLIKPRNVSPVRGMEGECSEDCLSLAPFLKEIPQELILADQRVQQGPMDNQLEID | 1319 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 31301357 | 31312404 | + | ClG42_11g0203300.10 | Clacu11g2033 | 262910 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g2033 | 1319 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 481 | 589 | - | - | |
| Clacu11g2033 | 1319 | Gene3D | - | 612 | 803 | - | - | |
| Clacu11g2033 | 1319 | FunFam | Myosin IE heavy chain | 481 | 589 | - | - | |
| Clacu11g2033 | 1319 | FunFam | Myosin heavy chain | 424 | 480 | - | - | |
| Clacu11g2033 | 1319 | Gene3D | Kinesin motor domain | 241 | 846 | IPR036961 | - | |
| Clacu11g2033 | 1319 | Gene3D | - | 847 | 914 | - | - | |
| Clacu11g2033 | 1319 | Pfam | IQ calmodulin-binding motif | 983 | 1001 | IPR000048 | GO:0005515(InterPro) | |
| Clacu11g2033 | 1319 | Pfam | IQ calmodulin-binding motif | 941 | 958 | IPR000048 | GO:0005515(InterPro) | |
| Clacu11g2033 | 1319 | ProSiteProfiles | IQ motif profile. | 980 | 1009 | - | - | |
| Clacu11g2033 | 1319 | MobiDBLite | consensus disorder prediction | 76 | 96 | - | - | |
| Clacu11g2033 | 1319 | SMART | iq_5 | 914 | 936 | IPR000048 | GO:0005515(InterPro) | |
| Clacu11g2033 | 1319 | SMART | iq_5 | 979 | 1001 | IPR000048 | GO:0005515(InterPro) | |
| Clacu11g2033 | 1319 | SMART | iq_5 | 937 | 959 | IPR000048 | GO:0005515(InterPro) | |
| Clacu11g2033 | 1319 | Gene3D | - | 424 | 480 | - | - | |
| Clacu11g2033 | 1319 | MobiDBLite | consensus disorder prediction | 1002 | 1029 | - | - | |
| Clacu11g2033 | 1319 | ProSiteProfiles | Myosin motor domain profile. | 242 | 913 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | PANTHER | MYOSIN | 193 | 1254 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Clacu11g2033 | 1319 | PRINTS | Myosin heavy chain signature | 600 | 628 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | PRINTS | Myosin heavy chain signature | 368 | 395 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | PRINTS | Myosin heavy chain signature | 326 | 351 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | PRINTS | Myosin heavy chain signature | 272 | 291 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | PRINTS | Myosin heavy chain signature | 653 | 681 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | CDD | MYSc_Myo8 | 256 | 901 | IPR036022 | - | |
| Clacu11g2033 | 1319 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 222 | 962 | IPR027417 | - | |
| Clacu11g2033 | 1319 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 189 | 238 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | SMART | MYSc_2a | 236 | 914 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | Coils | Coil | 1040 | 1088 | - | - | |
| Clacu11g2033 | 1319 | ProSiteProfiles | IQ motif profile. | 938 | 966 | - | - | |
| Clacu11g2033 | 1319 | Pfam | Myosin head (motor domain) | 244 | 901 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu11g2033 | 1319 | Gene3D | - | 919 | 964 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g1455 | Clacu-Chr2:27980729 | Clacu11g2033 | Clacu-Chr11:31301357 | 1.10E-307 | dispersed | |
| Clacu09g0799 | Clacu-Chr9:7211269 | Clacu11g2033 | Clacu-Chr11:31301357 | 2.50E-136 | dispersed | |
| Clacu11g2033 | Clacu-Chr11:31301357 | Clacu06g0134 | Clacu-Chr6:1483935 | 1.10E-146 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g2033 | K10357 | - | csv:101210624 | 2099.32 |