Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2035 ATGCGGATAGCTGGAAGTGCTTATGATCAGAAACTTGTAACTTCATATGTGACATTCAGGGAGGAGATGAAAAATACACTTCGAATACTTGTCGCAACAGATTGCCATCTGGGCTATTTGGAGAAGGATGAAATACGGCGACATGATTCATTCAAGGCATTTGAAGAGATATGCTCAATTGCAGAACAAAAGCAGGTGGATTTTCTACTTCTTGGCGGTGACCTTTTCCATGAGAACAAGCCATCCCGATCAACATTAGTGAAGGCAATTGAGATCCTGCGTCGTCATTGCCTTAATGATAAACCAGTGCATTTCCAAGTTGTTAGCGACCAAACCATGAATTTTCCAAACACATTTGGTCACGTCAACTATGAAGATCCTCATTTTAATGTTGGCTTGCCAGTATTCAGTATTCATGGAAACCATGATGATCCTGCTGGAGTGGACAACCTTTCTGCTGTTGATATTCTCTCTGCATGCAATCTTGTGAACTACTTCGGGAAAATGGTTCTTGGTGGTTCTGGTGTTGGTCAGATCACCCTCTGCCCAATTCTTATCAGAAAGGGTTCAACATCCGTGGCTTTATATGGTCTTGGAAATATTAGAGATGAAAGGCTGAACAGGATGTTCCAGACACCACATGCTGTTCAGTGGATGCGGCCTGAAGCGCAGGAGGGCTGTCAAGTGACAGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGTCAAATCCTAAGAATGCAATAAATGAGCATTTTTTACCTCGCTTCCTGGACTTCATTGTTTGGGGACATGAACACGAATGTTTGGTTGACCCTCTGGAAGTTCCTGGGATGGGGTTTCACATCACACAACCAGGTTCCTCAGTCGCAACATCACTGATTGATGGTGAATCAAAGCCAAAACATGTCCTTTTGCTGGAAATTAAGGGTAATCAATATCGGCCAACCAAGATACCTTTGACATCTGTAAGGCCATTTGAGTACACAGAGATTGTATTGAAGGATGAGCCTGACATTGACTCTAATGATCAGAACTCAATCATCGAACACTTGGACAAAGTGGTTCAAAATTTGATTGAGAAATCTAGCAAAAGGGTTGTAAACAGATCAGAGCTCAAGCTTCCATTAGTCCGCATAAAGGTGGATTACTCTGGATTTATGACAATAAATCCTCAAAGATTTGGTCAGAAATATGTTGGGAAGGTAGCAAATCCGCAAGACATCCTTATATTCTCAAAAGCTTCAAGGAAAGGTCGTAATGAAGTGAAAATTGATGATTCTGAAAGGCTTCGTCCAGAAGAACTGAATCAACAAAATATAGAGGCTTTAGTTGCAGAAAATAATCTGAAAATGGAGATCCTTCCTGTCAATGATTTGGATGTTGCGCTGCACAATTTTGTAAATAAAGATGACAAAATGGCATTTTATTCCTGCGTGCAATACAATCTAGAAGAAACACGAGACCGAGTCAAGGAGAGGAACACCCGTTCCAAGAATGATACAACATTCACATCATCTGTTCAGTCATCAAAAGATTTCGGTAGTAAAAGTTCCACGGCAGCTGGGTCTGCTGTTTCTTTCAGTGATGATGAGGATACAGTAAAAGCATCTGGGTCAAAATCCACTAGAGGTCGGAAAGTATCATCTAGGGCAGCTGATGACACTTCAATTAAAACTTCCACGCGAGGAAGGGGAAGGGGTAGAGGGAGGGGCACCAGTAGTAGCCTTAAGCAGACAACTCTTGACGCAGCTCTTGGATTTCGCCAATCACAGAGATCTGCGACTGCTGCTGTTCGAAGCATAGCCGACACTGATGCTATGAATTCTGCTTCTAGTGGAGAACCAAGGGAAAATGAAGTTGAAGAAATTAACGACAGTTCGGAAAATGACGAAAGTCTTCTCAGCAAAGGAAGAAAGCGCACTGCTCCAAGGGGTAGAGGGAGAGGATCCACTCAGTCTAAACGGGGAAGGAAATCAGACAACTCTGCAGTTCAGAGAACGTTCATGGGTAGAAATGATGCTGATGATGACAGCGAAGATGAAGACAACGCGAGAAAGCTATTAAATAAGTCTCAGCCTCGGCGACCTCAATCTCGACTCGAGTTGGAGAACATGGTTCCTGTCCTGTCAATTGATCCTCTGTACAAATCCAAGATCGTATAA 2172 42.63 MRIAGSAYDQKLVTSYVTFREEMKNTLRILVATDCHLGYLEKDEIRRHDSFKAFEEICSIAEQKQVDFLLLGGDLFHENKPSRSTLVKAIEILRRHCLNDKPVHFQVVSDQTMNFPNTFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITLCPILIRKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEGCQVTDWFNILVLHQNRVKSNPKNAINEHFLPRFLDFIVWGHEHECLVDPLEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDEPDIDSNDQNSIIEHLDKVVQNLIEKSSKRVVNRSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGRNEVKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRDRVKERNTRSKNDTTFTSSVQSSKDFGSKSSTAAGSAVSFSDDEDTVKASGSKSTRGRKVSSRAADDTSIKTSTRGRGRGRGRGTSSSLKQTTLDAALGFRQSQRSATAAVRSIADTDAMNSASSGEPRENEVEEINDSSENDESLLSKGRKRTAPRGRGRGSTQSKRGRKSDNSAVQRTFMGRNDADDDSEDEDNARKLLNKSQPRRPQSRLELENMVPVLSIDPLYKSKIV 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31314230 31322140 - ClG42_11g0203500.10 Clacu11g2035 262912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2035 723 PIRSF DSB_repair_MRE11 14 696 IPR003701 GO:0004520(InterPro)|GO:0006302(InterPro)|GO:0008296(InterPro)|GO:0030870(InterPro)
Clacu11g2035 723 Gene3D - 23 327 IPR029052 -
Clacu11g2035 723 FunFam Double-strand break repair protein 22 327 - -
Clacu11g2035 723 SMART Mre11_DNA_bind_2 316 469 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Clacu11g2035 723 MobiDBLite consensus disorder prediction 502 535 - -
Clacu11g2035 723 SUPERFAMILY Metallo-dependent phosphatases 27 366 IPR029052 -
Clacu11g2035 723 MobiDBLite consensus disorder prediction 491 581 - -
Clacu11g2035 723 MobiDBLite consensus disorder prediction 549 564 - -
Clacu11g2035 723 FunFam Double-strand break repair protein 328 426 - -
Clacu11g2035 723 Gene3D Mre11, capping domain 328 426 IPR038487 -
Clacu11g2035 723 NCBIfam DNA repair protein (mre11) 25 416 IPR003701 GO:0004520(InterPro)|GO:0006302(InterPro)|GO:0008296(InterPro)|GO:0030870(InterPro)
Clacu11g2035 723 Pfam Mre11 DNA-binding presumed domain 317 469 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Clacu11g2035 723 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 19 673 - GO:0000014(PANTHER)|GO:0000723(PANTHER)|GO:0000724(PANTHER)|GO:0006303(PANTHER)|GO:0007095(PANTHER)|GO:0030870(PANTHER)|GO:0035861(PANTHER)|GO:0042138(PANTHER)|GO:0097552(PANTHER)
Clacu11g2035 723 MobiDBLite consensus disorder prediction 606 704 - -
Clacu11g2035 723 CDD MPP_Mre11_N 28 296 IPR041796 -
Clacu11g2035 723 Pfam Calcineurin-like phosphoesterase 27 271 IPR004843 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2035 K10865 - - csv:101217141 1254.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g300 . . . . . . . . . . . . . . . Cpe06g00719 . . . . . . . . Cla11g01805 Cam11g1871 . Cco11g1901 Clacu11g2035 Cmu11g1840 Cre11g2246 . . Cone14ag1088 Cone15ag1100 Lsi04g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010909 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28