Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2038 ATGGCCGTTGCCGACCGTCACAAGCCACACGCCGATGTGAAGCTCTTCAGGTTGTGTCCGATTTGGCAATCAGGGAATACTAATTCGTCTTCTTCCTCGTCCACTCAGAACCTTCACCATAGTAGCCATGTCCCTAGCGACAGAAACTCAACGGCTTCGAATAAAATGAAATCTTCATCGTCTTCCAAGACGGTGTCCTCTGTGGCGAAGTCGCTGTTGCCTCCTCGGCGTAGGCTCCGGCTCGATCCTAACAATTCTTTGTTCTTTCCTTATGAACCCGGGAAGCAGGTAAAGAGCGCCATCAAGTTGAAGAATACGAGCAGATCCCATGTAGCTTTCAAGTTTCAAACTACAGCCCCGAAGAGCTGTTATATGCGCCCCCCTGGTGGCATTCTTGCTCCTGGAGAAAATTTTATTGCTACTGTCTTCAGATTTGTGGAGCACCCGGAGAATAATGAAAAGCCAATGGACCAGAAGAGCAAAATTAAGTTTAAGATCATGAGCCTTAAAGTGAAAGGAGGAACAGAATACGCACCCGAGCTGTTTGAAGAACAGAAGGACCAAGTAACAGTTGAGAGGATTTTGCGGGTCGTATTTGTTGATCCAGAGAGACCTAGTGCAGCTCTCGAAAAGCTGAAACGTCAATTGGCCGAAGCCGAGGCTGCACTTGAAGCACGCAAGAAACCTCCAGTAGAAACAGGTCCTCAGGTTGTAAGAGGTGAAGAAAGAACGGAGGGAGAAATACCTTGCTCGTCAACAAGTCGGCGCAGTAGACTCTGTGTAAAGTTAGATTACTGTTGGCACTACACTCTTTTCGGTCGTAAATCTGTACAGTTGCAATATGCTTTTCTGGGATGCTCCAATAAATTTTTTGCATAG 879 46.87 MAVADRHKPHADVKLFRLCPIWQSGNTNSSSSSSTQNLHHSSHVPSDRNSTASNKMKSSSSSKTVSSVAKSLLPPRRRLRLDPNNSLFFPYEPGKQVKSAIKLKNTSRSHVAFKFQTTAPKSCYMRPPGGILAPGENFIATVFRFVEHPENNEKPMDQKSKIKFKIMSLKVKGGTEYAPELFEEQKDQVTVERILRVVFVDPERPSAALEKLKRQLAEAEAALEARKKPPVETGPQVVRGEERTEGEIPCSSTSRRSRLCVKLDYCWHYTLFGRKSVQLQYAFLGCSNKFFA 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31337319 31341650 - ClG42_11g0203800.10 Clacu11g2038 262915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2038 292 Gene3D Immunoglobulins 75 204 IPR013783 -
Clacu11g2038 292 ProSiteProfiles Major sperm protein (MSP) domain profile. 78 200 IPR000535 -
Clacu11g2038 292 Coils Coil 206 229 - -
Clacu11g2038 292 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 78 230 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Clacu11g2038 292 MobiDBLite consensus disorder prediction 26 69 - -
Clacu11g2038 292 SUPERFAMILY PapD-like 67 209 IPR008962 -
Clacu11g2038 292 MobiDBLite consensus disorder prediction 224 249 - -
Clacu11g2038 292 Pfam MSP (Major sperm protein) domain 79 188 IPR000535 -
Clacu11g2038 292 MobiDBLite consensus disorder prediction 26 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1763 Clacu-Chr2:31201526 Clacu11g2038 Clacu-Chr11:31337319 4.50E-65 dispersed
Clacu11g2038 Clacu-Chr11:31337319 Clacu01g2333 Clacu-Chr1:34123418 6.50E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g304 . . . . . . . . . . . . . . . Cpe06g00722 Cpe02g00727 . . . . . . . Cla11g01808 Cam11g1874 Cec11g1897 Cco11g1905 Clacu11g2038 Cmu11g1843 Cre11g2248 . . Cone14ag1092 Cone15ag1103 Lsi04g01276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000537 4 3 4 3 5 2 5 3 2 3 3 3 3 3 4 4 2 5 5 3 5 3 3 3 3 3 3 6 6 2 106